Variant report
| Variant | rs7710036 |
|---|---|
| Chromosome Location | chr5:147545917-147545918 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | GATA3 | chr5:147545484-147546191 | T-47D | breast: | n/a | chr5:147545945-147545955 chr5:147545641-147545657 chr5:147545641-147545657 chr5:147545639-147545660 chr5:147546009-147546020 |
| 2 | GATA3 | chr5:147545834-147546169 | T-47D | breast: | n/a | chr5:147545945-147545955 chr5:147546009-147546020 |
| 3 | GATA3 | chr5:147545886-147546037 | SH-SY5Y | brain: | n/a | chr5:147545945-147545955 chr5:147546009-147546020 |
| 4 | GATA3 | chr5:147545497-147546442 | MCF-7 | breast: | n/a | chr5:147545945-147545955 chr5:147545641-147545657 chr5:147545641-147545657 chr5:147545639-147545660 chr5:147546009-147546020 |
| 5 | JUND | chr5:147544984-147546952 | T-47D | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| SPINK14 | TF binding region |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1422988 | 1.00[AMR][1000 genomes] |
| rs41435445 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56683639 | 1.00[AMR][1000 genomes] |
| rs57180635 | 1.00[AMR][1000 genomes] |
| rs6891761 | 1.00[AMR][1000 genomes] |
| rs73271122 | 1.00[AMR][1000 genomes] |
| rs73271138 | 1.00[AMR][1000 genomes] |
| rs73271140 | 1.00[AMR][1000 genomes] |
| rs73271146 | 1.00[AMR][1000 genomes] |
| rs73271150 | 1.00[AMR][1000 genomes] |
| rs73271166 | 1.00[AMR][1000 genomes] |
| rs73271167 | 1.00[AMR][1000 genomes] |
| rs73271170 | 1.00[AMR][1000 genomes] |
| rs73271171 | 1.00[AMR][1000 genomes] |
| rs73271175 | 1.00[AMR][1000 genomes] |
| rs73271180 | 1.00[AMR][1000 genomes] |
| rs73271184 | 1.00[AMR][1000 genomes] |
| rs73271186 | 1.00[AMR][1000 genomes] |
| rs7727191 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7730524 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7734032 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv883015 | chr5:147404281-147751035 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv830515 | chr5:147460852-147602247 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv968858 | chr5:147544134-147548438 | Inactive region | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
