Variant report

Variant	rs73271180
Chromosome Location	chr5:147511981-147511982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:147511830..147514610-chr5:147516441..147519250,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1422988	1.00[AMR][1000 genomes]
rs41435445	1.00[AMR][1000 genomes]
rs56683639	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57180635	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6891761	1.00[AMR][1000 genomes]
rs6892070	0.96[AFR][1000 genomes]
rs73271122	1.00[AMR][1000 genomes]
rs73271138	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271140	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271146	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271150	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271166	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271167	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271170	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271171	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271184	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271186	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7710036	1.00[AMR][1000 genomes]
rs7727191	1.00[AMR][1000 genomes]
rs7730524	1.00[AMR][1000 genomes]
rs7734032	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830515	chr5:147460852-147602247	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147470400-147518400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr5:147471600-147514800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:147474200-147513400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:147481400-147513200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:147486800-147515000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:147487800-147525800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:147498800-147513000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:147500200-147513200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr5:147500400-147516000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr5:147502400-147526000	Weak transcription	Hela-S3	cervix
11	chr5:147503200-147512000	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr5:147505400-147514800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr5:147507400-147521000	Weak transcription	Esophagus	oesophagus
14	chr5:147507800-147512000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:147508600-147515000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:147509200-147518400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:147510400-147512000	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr5:147511000-147513000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr5:147511000-147514600	Weak transcription	Stomach Mucosa	stomach
20	chr5:147511400-147512000	Enhancers	Fetal Intestine Large	intestine
21	chr5:147511400-147512000	Enhancers	Fetal Intestine Small	intestine

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