Variant report

Variant	rs73291113
Chromosome Location	chr10:46095065-46095066
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12098366	1.00[EUR][1000 genomes]
rs17157825	0.89[EUR][1000 genomes]
rs17157859	0.91[EUR][1000 genomes]
rs17157861	0.91[EUR][1000 genomes]
rs17157890	0.96[EUR][1000 genomes]
rs17157931	0.96[EUR][1000 genomes]
rs3824618	0.91[EUR][1000 genomes]
rs4418752	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60791882	1.00[EUR][1000 genomes]
rs73291115	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs73291121	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73291122	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73291195	1.00[EUR][1000 genomes]
rs73291198	1.00[EUR][1000 genomes]
rs73292811	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73292848	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv895112	chr10:46012620-46202216	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1050880	chr10:46091441-46160597	Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv540588	chr10:46091441-46160597	ZNF genes & repeats Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73291113	ZFAND4	cis	Heart Left Ventricle	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:46090600-46167600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:46090800-46095800	Enhancers	Fetal Intestine Large	intestine
3	chr10:46090800-46096000	Weak transcription	Right Ventricle	heart
4	chr10:46091000-46095600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:46092800-46095200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:46093600-46095600	Weak transcription	Pancreas	Pancrea
7	chr10:46094000-46096000	Enhancers	Fetal Intestine Small	intestine
8	chr10:46094000-46096200	Enhancers	Liver	Liver
9	chr10:46094400-46096000	ZNF genes & repeats	K562	blood
10	chr10:46094600-46096000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:46094800-46095200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr10:46095000-46095400	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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