Variant report

Variant	rs73292811
Chromosome Location	chr10:46114121-46114122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:46106333..46108271-chr10:46111713..46114301,2	K562	blood:
2	chr10:46111949..46114220-chr10:46117450..46120210,3	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1060848	1.00[EUR][1000 genomes]
rs12771659	0.83[EUR][1000 genomes]
rs17157941	1.00[EUR][1000 genomes]
rs17157944	1.00[EUR][1000 genomes]
rs17157945	1.00[EUR][1000 genomes]
rs17157971	0.89[EUR][1000 genomes]
rs17158898	0.81[EUR][1000 genomes]
rs17159059	0.89[EUR][1000 genomes]
rs17159087	0.89[EUR][1000 genomes]
rs17159090	0.94[EUR][1000 genomes]
rs17159113	0.94[EUR][1000 genomes]
rs17159119	0.85[EUR][1000 genomes]
rs17696005	1.00[EUR][1000 genomes]
rs17696011	1.00[EUR][1000 genomes]
rs17696112	0.94[EUR][1000 genomes]
rs17768650	1.00[EUR][1000 genomes]
rs17768692	1.00[EUR][1000 genomes]
rs17768852	0.81[EUR][1000 genomes]
rs1868622	0.80[EUR][1000 genomes]
rs2197982	0.92[EUR][1000 genomes]
rs3802543	1.00[EUR][1000 genomes]
rs41301625	1.00[EUR][1000 genomes]
rs41301629	1.00[EUR][1000 genomes]
rs41301631	1.00[EUR][1000 genomes]
rs4418752	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4576771	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55814534	0.94[EUR][1000 genomes]
rs56034881	0.89[EUR][1000 genomes]
rs56277479	0.94[EUR][1000 genomes]
rs56388386	0.94[EUR][1000 genomes]
rs57279747	0.94[EUR][1000 genomes]
rs58849111	0.89[EUR][1000 genomes]
rs59689764	0.87[EUR][1000 genomes]
rs60791882	0.96[AFR][1000 genomes]
rs73291113	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73291195	0.96[AFR][1000 genomes]
rs73291198	0.96[AFR][1000 genomes]
rs73292848	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74128806	0.94[EUR][1000 genomes]
rs7898761	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv895112	chr10:46012620-46202216	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1050880	chr10:46091441-46160597	Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv540588	chr10:46091441-46160597	ZNF genes & repeats Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73292811	ZFAND4	cis	Heart Left Ventricle	GTEx

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:46090600-46167600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:46096200-46142000	Weak transcription	Brain Anterior Caudate	brain
3	chr10:46096400-46121600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:46096400-46121800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:46097800-46121600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:46097800-46121800	Weak transcription	Psoas Muscle	Psoas
7	chr10:46098200-46153400	Weak transcription	HSMM	muscle
8	chr10:46099200-46122200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr10:46099400-46119400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:46100200-46142600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr10:46101600-46121800	Weak transcription	Brain Substantia Nigra	brain
12	chr10:46102600-46119400	Weak transcription	GM12878-XiMat	blood
13	chr10:46103000-46121800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr10:46103000-46121800	Weak transcription	Spleen	Spleen
15	chr10:46103400-46130600	Weak transcription	Fetal Brain Male	brain
16	chr10:46103400-46142200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:46103600-46121800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr10:46103600-46132600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:46103800-46121400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr10:46103800-46134600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr10:46104400-46151400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:46104800-46121400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr10:46105000-46121800	Weak transcription	Pancreas	Pancrea
24	chr10:46105600-46141600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr10:46105800-46123800	Weak transcription	NHEK	skin
26	chr10:46106400-46121600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr10:46106400-46137000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr10:46106400-46141400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr10:46106400-46142000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr10:46106800-46128000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr10:46106800-46142000	Weak transcription	Fetal Kidney	kidney
32	chr10:46106800-46146400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr10:46107000-46125600	Weak transcription	Fetal Brain Female	brain
34	chr10:46107200-46119200	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr10:46107800-46121800	Weak transcription	Gastric	stomach
36	chr10:46107800-46141800	Weak transcription	Colon Smooth Muscle	Colon
37	chr10:46107800-46142000	Weak transcription	Esophagus	oesophagus
38	chr10:46108000-46121600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr10:46108000-46121800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:46108000-46155800	Weak transcription	Brain Angular Gyrus	brain
41	chr10:46108200-46142000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr10:46108400-46121000	Weak transcription	Primary B cells from cord blood	blood
43	chr10:46108400-46121400	Weak transcription	Thymus	Thymus
44	chr10:46108400-46121800	Weak transcription	Left Ventricle	heart
45	chr10:46108400-46121800	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr10:46108400-46121800	Weak transcription	Right Ventricle	heart
47	chr10:46108400-46122000	Weak transcription	Ovary	ovary
48	chr10:46108400-46122800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:46108400-46123000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr10:46108400-46142000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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