The 2.0 version of rSNPBase

Variant report

Variant rs17696011
Chromosome Location chr10:46157099-46157100
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:60 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:46090600-46167600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr10:46108400-46167000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr10:46120000-46157800 Weak transcription Muscle Satellite Cultured Cells --
4 chr10:46122200-46157200 Weak transcription Gastric stomach
5 chr10:46133800-46157800 Weak transcription Skeletal Muscle Male skeletal muscle
6 chr10:46137200-46167000 Weak transcription Right Ventricle heart
7 chr10:46137600-46167200 Weak transcription Ovary ovary
8 chr10:46142400-46158000 Weak transcription A549 lung
9 chr10:46142800-46167000 Weak transcription Esophagus oesophagus
10 chr10:46142800-46167000 Weak transcription Psoas Muscle Psoas
11 chr10:46142800-46167000 Weak transcription Skeletal Muscle Female skeletal muscle
12 chr10:46142800-46167200 Weak transcription Aorta Aorta
13 chr10:46143200-46167000 Weak transcription Rectal Mucosa Donor 31 rectum
14 chr10:46143200-46167200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
15 chr10:46143200-46167400 Weak transcription Left Ventricle heart
16 chr10:46143400-46167000 Weak transcription H1 Cell Line embryonic stem cell
17 chr10:46143400-46167000 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr10:46143600-46167200 Weak transcription Fetal Lung lung
19 chr10:46143800-46157400 Weak transcription Stomach Smooth Muscle stomach
20 chr10:46147200-46167000 Weak transcription Duodenum Mucosa Duodenum
21 chr10:46148200-46158000 Weak transcription Fetal Heart heart
22 chr10:46149600-46160800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr10:46149600-46167000 Weak transcription Brain Hippocampus Middle brain
24 chr10:46149600-46167200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
25 chr10:46149800-46163800 Weak transcription Brain Anterior Caudate brain
26 chr10:46152000-46157600 ZNF genes & repeats GM12878-XiMat blood
27 chr10:46152800-46167000 Weak transcription Monocytes-CD14+_RO01746 blood
28 chr10:46154000-46167000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
29 chr10:46154800-46158600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr10:46155000-46157800 ZNF genes & repeats Primary hematopoietic stem cells blood
31 chr10:46155400-46157200 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
32 chr10:46155600-46157200 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
33 chr10:46155600-46157200 Strong transcription Liver Liver
34 chr10:46155600-46157400 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood
35 chr10:46156200-46158200 Strong transcription Sigmoid Colon Sigmoid Colon
36 chr10:46156400-46157200 ZNF genes & repeats Primary monocytes fromperipheralblood blood
37 chr10:46156400-46157200 ZNF genes & repeats Primary mononuclear cells fromperipheralblood Blood
38 chr10:46156400-46157600 Strong transcription Primary T helper naive cells from peripheral blood blood
39 chr10:46156400-46157800 Strong transcription Thymus Thymus
40 chr10:46156600-46157200 Genic enhancers Primary T cells fromperipheralblood blood
41 chr10:46156600-46157400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
42 chr10:46156800-46157400 Weak transcription Adipose Nuclei Adipose
43 chr10:46156800-46158200 Strong transcription Primary T cells from cord blood blood
44 chr10:46156800-46158200 Strong transcription Dnd41 blood
45 chr10:46156800-46158400 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
46 chr10:46156800-46158800 Weak transcription Primary T killer memory cells from peripheral blood blood
47 chr10:46156800-46167000 Weak transcription Primary B cells from peripheral blood blood
48 chr10:46156800-46167000 Weak transcription Duodenum Smooth Muscle Duodenum
49 chr10:46157000-46158200 Strong transcription Primary T helper cells PMA-I stimulated --
50 chr10:46157000-46158200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --

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Last update: Aug 31, 2015