Variant report

Variant	rs12098366
Chromosome Location	chr10:46091616-46091617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:46089818..46091766-chr10:51564729..51566878,2	K562	blood:
2	chr10:46090407..46092284-chr10:46092832..46094617,2	K562	blood:
3	chr10:45473658..45475931-chr10:46089040..46091906,2	K562	blood:

Variant related genes	Relation type
ENSG00000138293	Chromatin interaction
ENSG00000165507	Chromatin interaction

Extended variants
information (count: 232 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:225)

rs_ID	r²[population]
rs10508895	0.88[ASN][1000 genomes]
rs10508896	1.00[ASN][1000 genomes]
rs1060848	0.94[ASN][1000 genomes]
rs11239526	0.80[ASN][1000 genomes]
rs12761573	1.00[ASN][1000 genomes]
rs12762495	0.94[ASN][1000 genomes]
rs12763205	0.88[ASN][1000 genomes]
rs12763285	1.00[ASN][1000 genomes]
rs12764485	0.88[ASN][1000 genomes]
rs12764652	0.88[ASN][1000 genomes]
rs12764693	0.94[ASN][1000 genomes]
rs12765244	1.00[ASN][1000 genomes]
rs12766550	0.88[ASN][1000 genomes]
rs12766764	1.00[ASN][1000 genomes]
rs12768131	0.88[ASN][1000 genomes]
rs12769244	0.88[ASN][1000 genomes]
rs12771275	0.88[ASN][1000 genomes]
rs12772102	1.00[ASN][1000 genomes]
rs12772485	0.88[ASN][1000 genomes]
rs12773263	0.88[ASN][1000 genomes]
rs12773463	0.88[ASN][1000 genomes]
rs12774453	1.00[ASN][1000 genomes]
rs12774690	0.88[ASN][1000 genomes]
rs12775527	0.94[ASN][1000 genomes]
rs12776291	1.00[ASN][1000 genomes]
rs12777172	1.00[ASN][1000 genomes]
rs12778143	1.00[ASN][1000 genomes]
rs12778980	0.88[ASN][1000 genomes]
rs12779005	1.00[ASN][1000 genomes]
rs12779198	0.94[ASN][1000 genomes]
rs12779204	1.00[ASN][1000 genomes]
rs12779281	0.88[ASN][1000 genomes]
rs12779637	1.00[ASN][1000 genomes]
rs12779976	1.00[ASN][1000 genomes]
rs12781186	0.94[ASN][1000 genomes]
rs12781506	1.00[ASN][1000 genomes]
rs12783233	0.94[ASN][1000 genomes]
rs17157798	0.88[ASN][1000 genomes]
rs17157825	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17157832	0.88[ASN][1000 genomes]
rs17157836	0.88[ASN][1000 genomes]
rs17157839	0.83[ASN][1000 genomes]
rs17157852	0.88[ASN][1000 genomes]
rs17157859	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17157861	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17157880	0.94[ASN][1000 genomes]
rs17157884	0.94[ASN][1000 genomes]
rs17157885	0.94[ASN][1000 genomes]
rs17157887	0.94[ASN][1000 genomes]
rs17157890	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17157898	1.00[ASN][1000 genomes]
rs17157919	1.00[ASN][1000 genomes]
rs17157928	1.00[ASN][1000 genomes]
rs17157931	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17157941	0.85[ASN][1000 genomes]
rs17157944	0.85[ASN][1000 genomes]
rs17157945	0.88[ASN][1000 genomes]
rs17451208	1.00[ASN][1000 genomes]
rs17523413	0.88[ASN][1000 genomes]
rs17696005	0.88[ASN][1000 genomes]
rs17696011	0.88[ASN][1000 genomes]
rs17768650	0.85[ASN][1000 genomes]
rs17768692	0.88[ASN][1000 genomes]
rs2229136	0.88[ASN][1000 genomes]
rs2279433	0.88[ASN][1000 genomes]
rs2279434	0.88[ASN][1000 genomes]
rs2288619	0.88[ASN][1000 genomes]
rs33997730	0.91[ASN][1000 genomes]
rs34011467	1.00[ASN][1000 genomes]
rs34081402	0.88[ASN][1000 genomes]
rs34081552	0.88[ASN][1000 genomes]
rs34138033	1.00[ASN][1000 genomes]
rs34144887	1.00[ASN][1000 genomes]
rs34163035	1.00[ASN][1000 genomes]
rs34176769	0.88[ASN][1000 genomes]
rs34195613	1.00[ASN][1000 genomes]
rs34268168	0.88[ASN][1000 genomes]
rs34285816	0.88[ASN][1000 genomes]
rs34309840	1.00[ASN][1000 genomes]
rs34312822	0.88[ASN][1000 genomes]
rs34383275	1.00[ASN][1000 genomes]
rs34415465	0.88[ASN][1000 genomes]
rs34516867	1.00[ASN][1000 genomes]
rs34539215	1.00[ASN][1000 genomes]
rs34566829	0.88[ASN][1000 genomes]
rs34574958	1.00[ASN][1000 genomes]
rs34604216	1.00[ASN][1000 genomes]
rs34618850	1.00[ASN][1000 genomes]
rs34654893	0.88[ASN][1000 genomes]
rs34661476	0.88[ASN][1000 genomes]
rs34663276	0.88[ASN][1000 genomes]
rs34670342	1.00[ASN][1000 genomes]
rs34731408	0.88[ASN][1000 genomes]
rs34771643	0.88[ASN][1000 genomes]
rs34793991	1.00[ASN][1000 genomes]
rs34879733	0.82[ASN][1000 genomes]
rs34897497	0.94[ASN][1000 genomes]
rs34937315	0.88[ASN][1000 genomes]
rs34960345	0.88[ASN][1000 genomes]
rs35001302	1.00[ASN][1000 genomes]
rs35003524	1.00[ASN][1000 genomes]
rs35034867	1.00[ASN][1000 genomes]
rs35036712	1.00[ASN][1000 genomes]
rs35047800	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35049879	1.00[ASN][1000 genomes]
rs35070150	1.00[ASN][1000 genomes]
rs35079443	0.88[ASN][1000 genomes]
rs35081812	0.88[ASN][1000 genomes]
rs35131026	0.94[ASN][1000 genomes]
rs35150810	1.00[ASN][1000 genomes]
rs35172875	0.88[ASN][1000 genomes]
rs35183191	1.00[ASN][1000 genomes]
rs35183751	1.00[ASN][1000 genomes]
rs35187216	0.88[ASN][1000 genomes]
rs35294227	0.88[ASN][1000 genomes]
rs35303148	0.88[ASN][1000 genomes]
rs35326978	0.88[ASN][1000 genomes]
rs35331393	1.00[ASN][1000 genomes]
rs35349326	0.88[ASN][1000 genomes]
rs35356752	0.85[ASN][1000 genomes]
rs35394192	0.88[ASN][1000 genomes]
rs35410535	0.88[ASN][1000 genomes]
rs35424022	0.88[ASN][1000 genomes]
rs35464392	0.88[ASN][1000 genomes]
rs35488254	0.88[ASN][1000 genomes]
rs35504302	0.88[ASN][1000 genomes]
rs35506889	1.00[ASN][1000 genomes]
rs35585999	1.00[ASN][1000 genomes]
rs35626777	1.00[ASN][1000 genomes]
rs35629170	1.00[ASN][1000 genomes]
rs35632234	0.88[ASN][1000 genomes]
rs35639934	1.00[ASN][1000 genomes]
rs35670420	1.00[ASN][1000 genomes]
rs35713143	1.00[ASN][1000 genomes]
rs35750365	0.94[ASN][1000 genomes]
rs35775604	0.94[ASN][1000 genomes]
rs35824277	1.00[ASN][1000 genomes]
rs35902429	0.94[ASN][1000 genomes]
rs35916836	1.00[ASN][1000 genomes]
rs35918870	0.88[ASN][1000 genomes]
rs35934513	1.00[ASN][1000 genomes]
rs35968565	1.00[ASN][1000 genomes]
rs36047811	0.88[ASN][1000 genomes]
rs36052429	0.94[ASN][1000 genomes]
rs36053776	1.00[ASN][1000 genomes]
rs36054203	1.00[ASN][1000 genomes]
rs36070535	0.88[ASN][1000 genomes]
rs36070902	0.88[ASN][1000 genomes]
rs36074276	1.00[ASN][1000 genomes]
rs36100685	1.00[ASN][1000 genomes]
rs36102549	0.94[ASN][1000 genomes]
rs36109121	1.00[ASN][1000 genomes]
rs3740109	0.88[ASN][1000 genomes]
rs3740111	0.88[ASN][1000 genomes]
rs3764990	0.88[ASN][1000 genomes]
rs3802543	0.88[ASN][1000 genomes]
rs3824616	0.88[ASN][1000 genomes]
rs3824618	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41301625	0.94[ASN][1000 genomes]
rs41301629	0.88[ASN][1000 genomes]
rs41301631	0.88[ASN][1000 genomes]
rs4442500	1.00[ASN][1000 genomes]
rs4576771	0.94[ASN][1000 genomes]
rs60791882	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71494785	0.88[ASN][1000 genomes]
rs71494786	0.88[ASN][1000 genomes]
rs71494787	0.88[ASN][1000 genomes]
rs71494788	0.88[ASN][1000 genomes]
rs71494789	0.88[ASN][1000 genomes]
rs71494790	0.88[ASN][1000 genomes]
rs71494791	0.88[ASN][1000 genomes]
rs71494792	0.88[ASN][1000 genomes]
rs71494793	0.88[ASN][1000 genomes]
rs71494794	0.88[ASN][1000 genomes]
rs71494797	0.88[ASN][1000 genomes]
rs71494798	0.88[ASN][1000 genomes]
rs71494799	0.88[ASN][1000 genomes]
rs71494800	0.88[ASN][1000 genomes]
rs71496603	0.88[ASN][1000 genomes]
rs71496605	0.88[ASN][1000 genomes]
rs71496606	0.88[ASN][1000 genomes]
rs71496607	0.88[ASN][1000 genomes]
rs71496608	0.94[ASN][1000 genomes]
rs71496609	0.94[ASN][1000 genomes]
rs71496610	0.94[ASN][1000 genomes]
rs71496611	0.94[ASN][1000 genomes]
rs71496612	1.00[ASN][1000 genomes]
rs71496613	1.00[ASN][1000 genomes]
rs71496614	1.00[ASN][1000 genomes]
rs71496618	1.00[ASN][1000 genomes]
rs71496619	1.00[ASN][1000 genomes]
rs71496620	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71496621	1.00[ASN][1000 genomes]
rs71496622	1.00[ASN][1000 genomes]
rs71496623	1.00[ASN][1000 genomes]
rs71496624	1.00[ASN][1000 genomes]
rs71496625	1.00[ASN][1000 genomes]
rs71499565	0.88[ASN][1000 genomes]
rs71499566	0.88[ASN][1000 genomes]
rs71499567	1.00[ASN][1000 genomes]
rs71515355	0.88[ASN][1000 genomes]
rs73291113	1.00[EUR][1000 genomes]
rs73291115	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73291121	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73291122	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73291195	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73291198	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs768673	0.88[ASN][1000 genomes]
rs7898761	0.94[ASN][1000 genomes]
rs901682	0.88[ASN][1000 genomes]
rs901683	0.88[ASN][1000 genomes]
rs901684	0.88[ASN][1000 genomes]
rs9422439	1.00[ASN][1000 genomes]
rs9422440	1.00[ASN][1000 genomes]
rs9422441	1.00[ASN][1000 genomes]
rs9422442	1.00[ASN][1000 genomes]
rs9422647	0.88[ASN][1000 genomes]
rs9422650	1.00[ASN][1000 genomes]
rs9422651	1.00[ASN][1000 genomes]
rs9422652	1.00[ASN][1000 genomes]
rs9422653	1.00[ASN][1000 genomes]
rs9422654	1.00[ASN][1000 genomes]
rs9422655	1.00[ASN][1000 genomes]
rs9422657	1.00[ASN][1000 genomes]
rs9422658	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv895112	chr10:46012620-46202216	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1050880	chr10:46091441-46160597	Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv540588	chr10:46091441-46160597	ZNF genes & repeats Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12098366	ZFAND4	cis	Heart Left Ventricle	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:46090400-46092600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:46090400-46094200	Weak transcription	Small Intestine	intestine
3	chr10:46090600-46167600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:46090800-46092800	Enhancers	Fetal Intestine Small	intestine
5	chr10:46090800-46094800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:46090800-46095800	Enhancers	Fetal Intestine Large	intestine
7	chr10:46090800-46096000	Weak transcription	Right Ventricle	heart
8	chr10:46091000-46092800	Enhancers	HepG2	liver
9	chr10:46091000-46094000	Weak transcription	Liver	Liver
10	chr10:46091000-46094400	Weak transcription	K562	blood
11	chr10:46091000-46095600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:46091600-46091800	Enhancers	Rectal Mucosa Donor 29	rectum

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