Variant report

Variant	rs3824616
Chromosome Location	chr10:45952929-45952930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:45946458-45953802	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45949197..45952104-chr10:45952176..45956457,4	K562	blood:
2	chr10:45948847..45950863-chr10:45951978..45954302,2	K562	blood:

Variant related genes	Relation type
ENSG00000231964	TF binding region

Extended variants
information (count: 231 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:224)

rs_ID	r²[population]
rs10508895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1060848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11239526	0.91[ASN][1000 genomes]
rs12098366	0.88[ASN][1000 genomes]
rs12761399	1.00[EUR][1000 genomes]
rs12761573	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12762495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12763205	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763285	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12764485	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764693	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12765244	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12766550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12766764	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12768131	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12769244	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771275	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12772102	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12772485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12773263	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12773463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12774453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12774690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12775527	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12776291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12777172	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12778143	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12778980	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12779005	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12779198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12779204	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12779281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12779637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12779976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12781186	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12781506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12783233	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17157798	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17157825	0.97[ASN][1000 genomes]
rs17157832	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17157836	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17157839	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17157852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17157859	1.00[ASN][1000 genomes]
rs17157861	1.00[ASN][1000 genomes]
rs17157880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17157884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17157885	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17157887	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17157890	0.94[ASN][1000 genomes]
rs17157898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17157919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17157928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17157931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17157941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs17157944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs17157945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17451208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17523413	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17696005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs2229136	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2279433	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2279434	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2288619	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.84[MKK][hapmap];0.92[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33997730	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34011467	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34019727	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34081402	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34081552	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34138033	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34144887	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34163035	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34176769	1.00[EUR][1000 genomes]
rs34195613	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34268168	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34285816	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34309840	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34312822	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34383275	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34415465	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34516867	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34539215	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34566829	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34574958	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34604216	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34618850	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34654893	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34661476	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34663276	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34670342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34731408	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34771643	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34793991	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34879733	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34897497	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34937315	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34960345	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35001302	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35003524	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35034867	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35036712	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35047800	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35049879	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35070150	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35079443	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35081812	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35131026	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35150810	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35172875	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35183191	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35183751	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35187216	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35294227	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35303148	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35326978	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35331393	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35349326	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35356752	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35394192	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35410535	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35424022	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35464392	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35469686	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35488254	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35504302	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35506889	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35585999	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35626777	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35629170	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35632234	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35639934	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35670420	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35713143	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35735968	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35750365	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35775604	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35824277	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35902429	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35916836	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35918870	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35934513	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35968565	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35993099	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36047811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36052429	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36053776	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36054203	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36070535	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36070902	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36074276	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36100685	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36102549	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36109121	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3740109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740111	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3764990	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824618	1.00[ASN][1000 genomes]
rs41301625	0.82[ASN][1000 genomes]
rs4418752	1.00[CEU][hapmap];0.84[TSI][hapmap]
rs4442500	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4576771	0.82[ASN][1000 genomes]
rs60791882	0.88[ASN][1000 genomes]
rs71494785	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71494786	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71494787	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71494788	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71494789	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71494790	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71494791	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71494792	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71494793	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71494794	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71494797	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71494798	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71494799	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71494800	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71496603	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71496605	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71496606	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71496607	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71496608	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71496609	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71496610	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71496611	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71496612	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71496613	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71496614	0.88[ASN][1000 genomes]
rs71496618	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71496619	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71496620	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71496621	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71496622	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71496623	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71496624	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71496625	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71499565	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71499566	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71499567	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71515355	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73291115	0.88[ASN][1000 genomes]
rs73291121	0.88[ASN][1000 genomes]
rs73291122	0.88[ASN][1000 genomes]
rs73291195	0.88[ASN][1000 genomes]
rs73291198	0.88[ASN][1000 genomes]
rs768673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898761	0.82[ASN][1000 genomes]
rs901682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs901683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs901684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9422439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9422440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9422441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9422442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9422647	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9422650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9422651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9422652	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9422653	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9422654	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9422655	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9422657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9422658	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895107	chr10:45850300-45953767	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv895110	chr10:45912771-45953767	Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3824616	ZFAND4	cis	Heart Left Ventricle	GTEx

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45938600-45967200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:45938600-45967200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:45942800-45953200	Weak transcription	Spleen	Spleen
4	chr10:45943200-45955000	Weak transcription	Colonic Mucosa	Colon
5	chr10:45943200-45965400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:45943400-45954000	Weak transcription	K562	blood
7	chr10:45946200-45954400	Weak transcription	Fetal Brain Female	brain
8	chr10:45947800-45953400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr10:45948000-45963600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr10:45948400-45955600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:45948600-45955600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:45948600-45959800	Strong transcription	Fetal Intestine Small	intestine
13	chr10:45948600-45959800	Strong transcription	Fetal Stomach	stomach
14	chr10:45948800-45953800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:45949200-45965600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr10:45949400-45954400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:45949400-45955400	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr10:45949400-45959800	Strong transcription	Primary T cells from cord blood	blood
19	chr10:45949800-45953200	Weak transcription	Aorta	Aorta
20	chr10:45949800-45954200	Weak transcription	HSMMtube	muscle
21	chr10:45949800-45958600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:45950000-45956800	Strong transcription	Stomach Smooth Muscle	stomach
23	chr10:45950000-45967200	Weak transcription	Psoas Muscle	Psoas
24	chr10:45950200-45959400	Strong transcription	Fetal Intestine Large	intestine
25	chr10:45950200-45960600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr10:45950400-45956800	Strong transcription	Sigmoid Colon	Sigmoid Colon
27	chr10:45950400-45957000	Weak transcription	Fetal Kidney	kidney
28	chr10:45950400-45959400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:45950400-45959600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr10:45950400-45966200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:45950600-45953000	Weak transcription	Brain Angular Gyrus	brain
32	chr10:45950600-45953000	Weak transcription	Brain Substantia Nigra	brain
33	chr10:45950600-45953200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr10:45950600-45958600	Weak transcription	Right Atrium	heart
35	chr10:45950800-45953000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr10:45950800-45954800	Strong transcription	Brain Cingulate Gyrus	brain
37	chr10:45950800-45955400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:45950800-45955800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr10:45950800-45957000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr10:45950800-45965600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr10:45951000-45953800	Strong transcription	Placenta	Placenta
42	chr10:45951000-45954200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:45951000-45955400	Strong transcription	Adipose Nuclei	Adipose
44	chr10:45951000-45955400	Strong transcription	Thymus	Thymus
45	chr10:45951000-45956400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:45951000-45956800	Strong transcription	Duodenum Mucosa	Duodenum
47	chr10:45951000-45958400	Weak transcription	Fetal Heart	heart
48	chr10:45951000-45958800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr10:45951000-45960600	Weak transcription	Fetal Brain Male	brain
50	chr10:45951000-45965600	Weak transcription	Brain Germinal Matrix	brain

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