The 2.0 version of rSNPBase

Variant report

Variant rs3740109
Chromosome Location chr10:45951081-45951082
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:45929200-45951600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr10:45934000-45951200 Weak transcription Esophagus oesophagus
3 chr10:45938600-45967200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr10:45938600-45967200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr10:45941800-45951600 Weak transcription Primary monocytes fromperipheralblood blood
6 chr10:45942000-45951800 Weak transcription Monocytes-CD14+_RO01746 blood
7 chr10:45942800-45953200 Weak transcription Spleen Spleen
8 chr10:45943000-45952800 Weak transcription Primary B cells from cord blood blood
9 chr10:45943200-45955000 Weak transcription Colonic Mucosa Colon
10 chr10:45943200-45965400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
11 chr10:45943400-45954000 Weak transcription K562 blood
12 chr10:45946200-45954400 Weak transcription Fetal Brain Female brain
13 chr10:45946400-45951400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
14 chr10:45946800-45952600 Weak transcription Fetal Lung lung
15 chr10:45947000-45951200 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr10:45947200-45952200 Weak transcription HepG2 liver
17 chr10:45947600-45951600 Weak transcription Ovary ovary
18 chr10:45947600-45952800 Weak transcription Dnd41 blood
19 chr10:45947800-45953400 Weak transcription Primary T helper naive cells from peripheral blood blood
20 chr10:45948000-45963600 Weak transcription Pancreatic Islets Pancreatic Islet
21 chr10:45948400-45951200 Weak transcription Primary T helper naive cells fromperipheralblood blood
22 chr10:45948400-45952000 Genic enhancers Fetal Muscle Trunk muscle
23 chr10:45948400-45955600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
24 chr10:45948600-45951200 Weak transcription Primary T cells fromperipheralblood blood
25 chr10:45948600-45955600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr10:45948600-45959800 Strong transcription Fetal Intestine Small intestine
27 chr10:45948600-45959800 Strong transcription Fetal Stomach stomach
28 chr10:45948800-45951800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
29 chr10:45948800-45951800 Enhancers GM12878-XiMat blood
30 chr10:45948800-45952000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
31 chr10:45948800-45953800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr10:45949000-45951400 Enhancers Liver Liver
33 chr10:45949200-45965600 Weak transcription Placenta Amnion Placenta Amnion
34 chr10:45949400-45951200 Enhancers Pancreas Pancrea
35 chr10:45949400-45954400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr10:45949400-45955400 Strong transcription Rectal Mucosa Donor 29 rectum
37 chr10:45949400-45959800 Strong transcription Primary T cells from cord blood blood
38 chr10:45949600-45952000 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr10:45949800-45951200 Weak transcription Gastric stomach
40 chr10:45949800-45951600 Weak transcription Primary hematopoietic stem cells blood
41 chr10:45949800-45951600 Weak transcription Primary hematopoietic stem cells short term culture blood
42 chr10:45949800-45951600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
43 chr10:45949800-45953200 Weak transcription Aorta Aorta
44 chr10:45949800-45954200 Weak transcription HSMMtube muscle
45 chr10:45949800-45958600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
46 chr10:45950000-45951600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
47 chr10:45950000-45951600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr10:45950000-45951600 Weak transcription Primary T helper cells PMA-I stimulated --
49 chr10:45950000-45951600 Weak transcription Brain Inferior Temporal Lobe brain
50 chr10:45950000-45952600 Genic enhancers Primary B cells from peripheral blood blood

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Last update: Aug 31, 2015