Variant report

Variant	rs73293546
Chromosome Location	chr10:49646770-49646771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs59420160	1.00[AFR][1000 genomes]
rs61020424	1.00[AFR][1000 genomes]
rs61137889	1.00[AFR][1000 genomes]
rs73293150	1.00[AFR][1000 genomes]
rs73293155	1.00[AFR][1000 genomes]
rs73293165	1.00[AFR][1000 genomes]
rs73293173	1.00[AFR][1000 genomes]
rs73293176	1.00[AFR][1000 genomes]
rs73293188	1.00[AFR][1000 genomes]
rs73293525	1.00[AFR][1000 genomes]
rs73293535	1.00[AFR][1000 genomes]
rs73294804	1.00[AFR][1000 genomes]
rs73294820	1.00[AFR][1000 genomes]
rs73296759	1.00[AFR][1000 genomes]
rs73296764	1.00[AFR][1000 genomes]
rs73296795	1.00[AFR][1000 genomes]
rs73296802	1.00[AFR][1000 genomes]
rs73307994	1.00[AFR][1000 genomes]
rs73309908	1.00[AFR][1000 genomes]
rs73309909	1.00[AFR][1000 genomes]
rs73309919	1.00[AFR][1000 genomes]
rs73309924	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1039508	chr10:49595718-49654403	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv519701	chr10:49636507-49651349	Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49607600-49647800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:49607600-49652400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:49612000-49664200	Weak transcription	Thymus	Thymus
4	chr10:49612800-49660200	Weak transcription	Aorta	Aorta
5	chr10:49619000-49664200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:49620800-49646800	Weak transcription	Hela-S3	cervix
7	chr10:49620800-49647000	Weak transcription	NHDF-Ad	bronchial
8	chr10:49620800-49647600	Weak transcription	Colonic Mucosa	Colon
9	chr10:49620800-49652400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:49620800-49658600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:49621200-49647000	Weak transcription	Fetal Intestine Small	intestine
12	chr10:49621200-49647400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:49621200-49647800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:49621200-49657400	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:49621400-49647600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr10:49621400-49650800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr10:49621400-49652200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:49621400-49658600	Weak transcription	Brain Substantia Nigra	brain
19	chr10:49621400-49664400	Weak transcription	Brain Angular Gyrus	brain
20	chr10:49621600-49647800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:49621600-49652200	Weak transcription	Fetal Heart	heart
22	chr10:49623000-49647000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:49624600-49664800	Weak transcription	Gastric	stomach
24	chr10:49625600-49646800	Weak transcription	HSMMtube	muscle
25	chr10:49625800-49648600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr10:49625800-49654400	Weak transcription	A549	lung
27	chr10:49626200-49647600	Weak transcription	GM12878-XiMat	blood
28	chr10:49626400-49647000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:49626400-49647000	Weak transcription	NHEK	skin
30	chr10:49626600-49647000	Weak transcription	HepG2	liver
31	chr10:49626600-49648800	Weak transcription	Lung	lung
32	chr10:49626600-49664400	Weak transcription	Spleen	Spleen
33	chr10:49630400-49652400	Weak transcription	Pancreas	Pancrea
34	chr10:49632800-49647800	Weak transcription	Psoas Muscle	Psoas
35	chr10:49635200-49652200	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr10:49635400-49646800	Weak transcription	NHLF	lung
37	chr10:49635400-49652800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr10:49636000-49647000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:49638200-49647000	Weak transcription	Ovary	ovary
40	chr10:49638600-49647200	Strong transcription	Primary T cells from cord blood	blood
41	chr10:49639000-49653000	Weak transcription	Fetal Stomach	stomach
42	chr10:49639200-49647200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr10:49639400-49652600	Weak transcription	Fetal Muscle Leg	muscle
44	chr10:49639600-49647000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr10:49639600-49652400	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr10:49639600-49657800	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr10:49640000-49652200	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr10:49640000-49652600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr10:49640400-49652200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr10:49641200-49647800	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links