Variant report

Variant	rs73309909
Chromosome Location	chr10:49615356-49615357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49605353..49609385-chr10:49612341..49615386,5	K562	blood:
2	chr10:49613649..49616466-chr10:49619116..49621899,2	K562	blood:
3	chr10:49613380..49617347-chr10:49637674..49642930,5	K562	blood:
4	chr10:49613029..49615967-chr10:49663530..49666398,2	K562	blood:

Variant related genes	Relation type
ENSG00000107643	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs59420160	1.00[AFR][1000 genomes]
rs61020424	1.00[AFR][1000 genomes]
rs61137889	1.00[AFR][1000 genomes]
rs73293150	1.00[AFR][1000 genomes]
rs73293155	1.00[AFR][1000 genomes]
rs73293165	1.00[AFR][1000 genomes]
rs73293173	1.00[AFR][1000 genomes]
rs73293176	1.00[AFR][1000 genomes]
rs73293188	1.00[AFR][1000 genomes]
rs73293525	1.00[AFR][1000 genomes]
rs73293535	1.00[AFR][1000 genomes]
rs73293546	1.00[AFR][1000 genomes]
rs73294804	1.00[AFR][1000 genomes]
rs73294820	1.00[AFR][1000 genomes]
rs73296759	1.00[AFR][1000 genomes]
rs73296764	1.00[AFR][1000 genomes]
rs73296795	1.00[AFR][1000 genomes]
rs73296802	1.00[AFR][1000 genomes]
rs73307994	1.00[AFR][1000 genomes]
rs73309908	1.00[AFR][1000 genomes]
rs73309919	1.00[AFR][1000 genomes]
rs73309924	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1039508	chr10:49595718-49654403	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49595000-49616000	Weak transcription	Primary B cells from cord blood	blood
2	chr10:49598600-49619800	Weak transcription	Fetal Intestine Small	intestine
3	chr10:49599200-49622200	Weak transcription	HepG2	liver
4	chr10:49599800-49618000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr10:49600000-49618600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr10:49600200-49617400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:49600200-49618200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr10:49600400-49616800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr10:49600400-49620200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:49605200-49618000	Weak transcription	Fetal Muscle Leg	muscle
11	chr10:49606800-49619800	Weak transcription	Fetal Stomach	stomach
12	chr10:49607600-49616600	Weak transcription	Fetal Thymus	thymus
13	chr10:49607600-49616800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:49607600-49618000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr10:49607600-49619400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:49607600-49619600	Weak transcription	Colonic Mucosa	Colon
17	chr10:49607600-49619600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr10:49607600-49624200	Weak transcription	Gastric	stomach
19	chr10:49607600-49624200	Weak transcription	Lung	lung
20	chr10:49607600-49647800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:49607600-49652400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:49607800-49616800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr10:49607800-49620400	Weak transcription	Stomach Mucosa	stomach
24	chr10:49608000-49645600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr10:49608200-49618000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:49608200-49618200	Weak transcription	Fetal Kidney	kidney
27	chr10:49608200-49619400	Weak transcription	Colon Smooth Muscle	Colon
28	chr10:49608200-49621000	Weak transcription	Small Intestine	intestine
29	chr10:49608200-49634400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr10:49608400-49618200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr10:49608600-49620200	Weak transcription	Right Ventricle	heart
32	chr10:49608800-49616800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr10:49608800-49618000	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:49608800-49618200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:49608800-49618600	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr10:49609000-49617800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:49609000-49620000	Weak transcription	Brain Hippocampus Middle	brain
38	chr10:49609000-49620600	Weak transcription	Hela-S3	cervix
39	chr10:49609200-49616800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr10:49609200-49618000	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr10:49609200-49618000	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr10:49609200-49618000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr10:49609200-49618000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr10:49609200-49618000	Weak transcription	Brain Anterior Caudate	brain
45	chr10:49609200-49618000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr10:49609200-49618000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr10:49609200-49618200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr10:49609200-49620000	Weak transcription	GM12878-XiMat	blood
49	chr10:49609200-49620800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr10:49609400-49618200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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