Variant report

Variant	rs73309924
Chromosome Location	chr10:49621286-49621287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49615995..49618408-chr10:49619011..49621814,2	K562	blood:
2	chr10:49613649..49616466-chr10:49619116..49621899,2	K562	blood:
3	chr10:49620234..49623060-chr10:49677590..49681287,3	K562	blood:
4	chr10:49620652..49623307-chr10:49629695..49632361,2	K562	blood:
5	chr10:49619514..49622153-chr10:49622504..49625064,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs59420160	1.00[AFR][1000 genomes]
rs61020424	1.00[AFR][1000 genomes]
rs61137889	1.00[AFR][1000 genomes]
rs73293150	1.00[AFR][1000 genomes]
rs73293155	1.00[AFR][1000 genomes]
rs73293165	1.00[AFR][1000 genomes]
rs73293173	1.00[AFR][1000 genomes]
rs73293176	1.00[AFR][1000 genomes]
rs73293188	1.00[AFR][1000 genomes]
rs73293525	1.00[AFR][1000 genomes]
rs73293535	1.00[AFR][1000 genomes]
rs73293546	1.00[AFR][1000 genomes]
rs73294804	1.00[AFR][1000 genomes]
rs73294820	1.00[AFR][1000 genomes]
rs73296759	1.00[AFR][1000 genomes]
rs73296764	1.00[AFR][1000 genomes]
rs73296795	1.00[AFR][1000 genomes]
rs73296802	1.00[AFR][1000 genomes]
rs73307994	1.00[AFR][1000 genomes]
rs73309908	1.00[AFR][1000 genomes]
rs73309909	1.00[AFR][1000 genomes]
rs73309919	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1039508	chr10:49595718-49654403	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49599200-49622200	Weak transcription	HepG2	liver
2	chr10:49607600-49624200	Weak transcription	Gastric	stomach
3	chr10:49607600-49624200	Weak transcription	Lung	lung
4	chr10:49607600-49647800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:49607600-49652400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:49608000-49645600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr10:49608200-49634400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:49612000-49664200	Weak transcription	Thymus	Thymus
9	chr10:49612800-49660200	Weak transcription	Aorta	Aorta
10	chr10:49614600-49622200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr10:49614600-49623000	Weak transcription	Pancreas	Pancrea
12	chr10:49614800-49638400	Weak transcription	HUVEC	blood vessel
13	chr10:49615000-49622000	Weak transcription	NHEK	skin
14	chr10:49615000-49622600	Weak transcription	HMEC	breast
15	chr10:49616000-49621600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr10:49616000-49621800	Strong transcription	Dnd41	blood
17	chr10:49616200-49621400	Strong transcription	Placenta	Placenta
18	chr10:49616600-49621600	Strong transcription	Fetal Thymus	thymus
19	chr10:49616800-49621600	Strong transcription	Skeletal Muscle Female	skeletal muscle
20	chr10:49616800-49621800	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr10:49617200-49624200	Weak transcription	Left Ventricle	heart
22	chr10:49617400-49621400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
23	chr10:49618000-49621400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:49618200-49621400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr10:49618200-49621400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr10:49618200-49621600	Strong transcription	Fetal Kidney	kidney
27	chr10:49618400-49621400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:49618400-49621600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:49618400-49621600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr10:49618800-49621400	ZNF genes & repeats	Fetal Brain Male	brain
31	chr10:49619000-49664200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:49619200-49621400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr10:49619200-49621400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
34	chr10:49619200-49621600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
35	chr10:49619400-49621400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:49619400-49621600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:49619400-49621600	Strong transcription	Colon Smooth Muscle	Colon
38	chr10:49619600-49622800	Weak transcription	Osteobl	bone
39	chr10:49619600-49628000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr10:49619600-49634000	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr10:49619600-49645600	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr10:49619800-49621400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr10:49619800-49621400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr10:49619800-49621600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
45	chr10:49619800-49621600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
46	chr10:49619800-49634400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr10:49620000-49621400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
48	chr10:49620000-49621400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr10:49620000-49621400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
50	chr10:49620200-49621400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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