Variant report

Variant	rs73296764
Chromosome Location	chr10:49578351-49578352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs59420160	1.00[AFR][1000 genomes]
rs61020424	1.00[AFR][1000 genomes]
rs61137889	1.00[AFR][1000 genomes]
rs73293150	1.00[AFR][1000 genomes]
rs73293155	1.00[AFR][1000 genomes]
rs73293165	1.00[AFR][1000 genomes]
rs73293173	1.00[AFR][1000 genomes]
rs73293176	1.00[AFR][1000 genomes]
rs73293188	1.00[AFR][1000 genomes]
rs73293525	1.00[AFR][1000 genomes]
rs73293535	1.00[AFR][1000 genomes]
rs73293546	1.00[AFR][1000 genomes]
rs73294804	1.00[AFR][1000 genomes]
rs73294820	1.00[AFR][1000 genomes]
rs73296759	1.00[AFR][1000 genomes]
rs73296795	1.00[AFR][1000 genomes]
rs73296802	1.00[AFR][1000 genomes]
rs73307994	1.00[AFR][1000 genomes]
rs73309908	1.00[AFR][1000 genomes]
rs73309909	1.00[AFR][1000 genomes]
rs73309919	1.00[AFR][1000 genomes]
rs73309924	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49566400-49580000	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:49568600-49582000	Weak transcription	Psoas Muscle	Psoas
3	chr10:49572200-49585600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:49573400-49578600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:49573400-49581800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:49573400-49588600	Weak transcription	Primary T cells from cord blood	blood
7	chr10:49573600-49591200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:49574000-49585600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:49574200-49589800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:49574600-49579800	Weak transcription	Fetal Lung	lung
11	chr10:49574600-49589800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:49574600-49589800	Weak transcription	Left Ventricle	heart
13	chr10:49574800-49589800	Weak transcription	A549	lung
14	chr10:49575200-49588000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:49576600-49589800	Weak transcription	Aorta	Aorta
16	chr10:49577200-49580800	Weak transcription	Lung	lung
17	chr10:49577200-49590000	Weak transcription	Ovary	ovary
18	chr10:49578000-49578600	Weak transcription	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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