Variant report

Variant	rs73297196
Chromosome Location	chr8:105647179-105647180
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105632918..105635015-chr8:105646007..105648866,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs3910537	1.00[AMR][1000 genomes]
rs57345526	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57576798	1.00[AMR][1000 genomes]
rs57818570	1.00[AMR][1000 genomes]
rs58114675	1.00[AMR][1000 genomes]
rs59216364	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59493567	1.00[AMR][1000 genomes]
rs60059403	1.00[AMR][1000 genomes]
rs60373042	1.00[AMR][1000 genomes]
rs60973921	1.00[AMR][1000 genomes]
rs61420349	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61625565	1.00[AMR][1000 genomes]
rs73293273	1.00[AMR][1000 genomes]
rs73293281	1.00[AMR][1000 genomes]
rs73293282	1.00[AMR][1000 genomes]
rs73293285	1.00[AMR][1000 genomes]
rs73295106	1.00[AMR][1000 genomes]
rs73295123	1.00[AMR][1000 genomes]
rs73295125	1.00[AMR][1000 genomes]
rs73295147	1.00[AMR][1000 genomes]
rs73295152	1.00[AMR][1000 genomes]
rs73295161	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295165	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295177	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295179	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295180	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295190	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73297119	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73297125	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73297141	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73297156	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73299147	1.00[AMR][1000 genomes]
rs73299148	1.00[AMR][1000 genomes]
rs73302809	1.00[AMR][1000 genomes]
rs73302822	1.00[AMR][1000 genomes]
rs73302823	1.00[AMR][1000 genomes]
rs73302825	1.00[AMR][1000 genomes]
rs73302826	1.00[AMR][1000 genomes]
rs971106	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv2422460	chr8:105573376-105746329	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105645400-105647600	Enhancers	Thymus	Thymus
2	chr8:105645400-105648200	Enhancers	Fetal Thymus	thymus
3	chr8:105645800-105647400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr8:105646200-105647200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr8:105646200-105647200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:105646400-105647200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr8:105646800-105650800	Weak transcription	K562	blood
8	chr8:105647000-105647400	Flanking Active TSS	Dnd41	blood

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