Variant report

Variant	rs73299147
Chromosome Location	chr8:105676167-105676168
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:105541186..105543623-chr8:105675952..105678475,2	K562	blood:
2	chr8:105652491..105655591-chr8:105675562..105678329,3	K562	blood:
3	chr8:105647273..105649368-chr8:105675042..105676589,2	K562	blood:
4	chr8:105676080..105680701-chr8:105682694..105685593,5	K562	blood:
5	chr8:105660475..105662004-chr8:105674809..105677022,2	K562	blood:
6	chr8:105633597..105636250-chr8:105676084..105679408,5	K562	blood:
7	chr8:105671044..105673505-chr8:105675145..105677961,2	MCF-7	breast:

No data

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs3910537	1.00[AMR][1000 genomes]
rs57345526	1.00[AMR][1000 genomes]
rs57576798	1.00[AMR][1000 genomes]
rs57818570	1.00[AMR][1000 genomes]
rs58114675	1.00[AMR][1000 genomes]
rs59216364	1.00[AMR][1000 genomes]
rs59493567	1.00[AMR][1000 genomes]
rs60059403	1.00[AMR][1000 genomes]
rs60373042	1.00[AMR][1000 genomes]
rs60973921	1.00[AMR][1000 genomes]
rs61420349	1.00[AMR][1000 genomes]
rs61625565	1.00[AMR][1000 genomes]
rs73293273	1.00[AMR][1000 genomes]
rs73293281	1.00[AMR][1000 genomes]
rs73293282	1.00[AMR][1000 genomes]
rs73293285	1.00[AMR][1000 genomes]
rs73295106	1.00[AMR][1000 genomes]
rs73295123	1.00[AMR][1000 genomes]
rs73295125	1.00[AMR][1000 genomes]
rs73295147	1.00[AMR][1000 genomes]
rs73295152	1.00[AMR][1000 genomes]
rs73295161	1.00[AMR][1000 genomes]
rs73295165	1.00[AMR][1000 genomes]
rs73295177	1.00[AMR][1000 genomes]
rs73295179	1.00[AMR][1000 genomes]
rs73295180	1.00[AMR][1000 genomes]
rs73295190	1.00[AMR][1000 genomes]
rs73297119	1.00[AMR][1000 genomes]
rs73297125	1.00[AMR][1000 genomes]
rs73297141	1.00[AMR][1000 genomes]
rs73297156	1.00[AMR][1000 genomes]
rs73297196	1.00[AMR][1000 genomes]
rs73299148	1.00[AMR][1000 genomes]
rs73302809	1.00[AMR][1000 genomes]
rs73302822	1.00[AMR][1000 genomes]
rs73302823	1.00[AMR][1000 genomes]
rs73302825	1.00[AMR][1000 genomes]
rs73302826	1.00[AMR][1000 genomes]
rs971106	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv2422460	chr8:105573376-105746329	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105671800-105677600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:105672000-105676400	Weak transcription	NH-A	brain
3	chr8:105672000-105677200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr8:105672000-105677200	Weak transcription	HSMMtube	muscle
5	chr8:105672200-105677000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:105672200-105677200	Weak transcription	NHLF	lung
7	chr8:105672400-105677000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:105672400-105677000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:105673800-105676400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:105675000-105677200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:105675200-105676400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:105675200-105676400	Weak transcription	Osteobl	bone
13	chr8:105675200-105676800	Weak transcription	HSMM	muscle
14	chr8:105675400-105676400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr8:105675400-105676600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr8:105675400-105676800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr8:105675400-105676800	Weak transcription	NHDF-Ad	bronchial
18	chr8:105675400-105677000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:105675400-105677000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:105675400-105677000	Weak transcription	A549	lung
21	chr8:105675600-105676800	Weak transcription	NHEK	skin
22	chr8:105675600-105677000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr8:105675800-105676200	Weak transcription	HMEC	breast
24	chr8:105675800-105677000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr8:105675800-105677400	Enhancers	K562	blood

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