Variant report

Variant	rs73302809
Chromosome Location	chr8:105740803-105740804
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs3910537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57345526	1.00[AMR][1000 genomes]
rs57576798	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57818570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59216364	1.00[AMR][1000 genomes]
rs60059403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60973921	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61420349	1.00[AMR][1000 genomes]
rs73295147	1.00[AMR][1000 genomes]
rs73295152	1.00[AMR][1000 genomes]
rs73295161	1.00[AMR][1000 genomes]
rs73295165	1.00[AMR][1000 genomes]
rs73295177	1.00[AMR][1000 genomes]
rs73295179	1.00[AMR][1000 genomes]
rs73295180	1.00[AMR][1000 genomes]
rs73295190	1.00[AMR][1000 genomes]
rs73297119	1.00[AMR][1000 genomes]
rs73297125	1.00[AMR][1000 genomes]
rs73297141	1.00[AMR][1000 genomes]
rs73297156	1.00[AMR][1000 genomes]
rs73297196	1.00[AMR][1000 genomes]
rs73299147	1.00[AMR][1000 genomes]
rs73299148	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302822	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302823	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302825	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302826	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs971106	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv2422460	chr8:105573376-105746329	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105736200-105743800	Weak transcription	Fetal Brain Female	brain
2	chr8:105738400-105742000	Weak transcription	Fetal Brain Male	brain
3	chr8:105739400-105743400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr8:105739400-105743400	Weak transcription	Thymus	Thymus
5	chr8:105739400-105743800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr8:105739600-105743400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr8:105740000-105743400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr8:105740000-105743600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr8:105740200-105742600	Weak transcription	Primary T cells from cord blood	blood

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