Variant report

Variant	rs73302823
Chromosome Location	chr8:105759941-105759942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105759294..105761344-chr8:105767843..105769830,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs3910537	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57345526	1.00[AMR][1000 genomes]
rs57576798	1.00[AMR][1000 genomes]
rs57818570	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59216364	1.00[AMR][1000 genomes]
rs60059403	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60973921	1.00[AMR][1000 genomes]
rs61420349	1.00[AMR][1000 genomes]
rs73295161	1.00[AMR][1000 genomes]
rs73295165	1.00[AMR][1000 genomes]
rs73295177	1.00[AMR][1000 genomes]
rs73295179	1.00[AMR][1000 genomes]
rs73295180	1.00[AMR][1000 genomes]
rs73295190	1.00[AMR][1000 genomes]
rs73297119	1.00[AMR][1000 genomes]
rs73297125	1.00[AMR][1000 genomes]
rs73297141	1.00[AMR][1000 genomes]
rs73297156	1.00[AMR][1000 genomes]
rs73297196	1.00[AMR][1000 genomes]
rs73299147	1.00[AMR][1000 genomes]
rs73299148	1.00[AMR][1000 genomes]
rs73302809	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs971106	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105758200-105760400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:105758200-105760400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:105758200-105760400	Enhancers	NHEK	skin
4	chr8:105758400-105760000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:105758400-105760400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:105758400-105760600	Enhancers	HMEC	breast
7	chr8:105758400-105760600	Enhancers	Osteobl	bone
8	chr8:105758600-105760400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:105758600-105760400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:105758600-105760400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:105758600-105760400	Enhancers	HSMM	muscle
12	chr8:105758600-105760400	Enhancers	NH-A	brain
13	chr8:105758600-105760600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr8:105758600-105760600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:105758600-105761000	Enhancers	NHDF-Ad	bronchial
16	chr8:105758800-105760200	Enhancers	NHLF	lung
17	chr8:105758800-105760600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:105759200-105760400	Enhancers	HSMMtube	muscle
19	chr8:105759600-105761200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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