Variant report

Variant	rs73301697
Chromosome Location	chr10:50476087-50476088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs7077519	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7081089	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303723	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305855	1.00[AMR][1000 genomes]
rs73305870	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305894	1.00[AMR][1000 genomes]
rs73305896	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305897	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305899	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305900	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50463000-50478800	Weak transcription	Right Atrium	heart
2	chr10:50470800-50480800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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