Variant report

Variant	rs73305900
Chromosome Location	chr10:50501404-50501405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs7077519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7081089	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301697	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305855	1.00[AMR][1000 genomes]
rs73305870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305894	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7899869	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50495200-50503800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:50496800-50503400	Weak transcription	Right Atrium	heart
3	chr10:50498000-50504600	Weak transcription	K562	blood
4	chr10:50499000-50502600	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:50499400-50503000	Weak transcription	Right Ventricle	heart
6	chr10:50500000-50501800	Enhancers	Spleen	Spleen
7	chr10:50500200-50503000	Weak transcription	Psoas Muscle	Psoas
8	chr10:50500200-50504200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr10:50500600-50504200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr10:50500600-50507800	Weak transcription	Lung	lung
11	chr10:50501000-50502200	Weak transcription	Left Ventricle	heart
12	chr10:50501400-50501600	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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