Variant report

Variant	rs7077519
Chromosome Location	chr10:50496427-50496428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2377966	1.00[MEX][hapmap]
rs7081089	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301697	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305855	1.00[AMR][1000 genomes]
rs73305870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305894	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7899869	0.87[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50491800-50498800	Weak transcription	Right Ventricle	heart
2	chr10:50494200-50498000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr10:50494200-50499000	Enhancers	Fetal Muscle Leg	muscle
4	chr10:50495200-50503800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:50495600-50497000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
6	chr10:50495800-50497800	Enhancers	Spleen	Spleen
7	chr10:50495800-50501000	Enhancers	Left Ventricle	heart
8	chr10:50496200-50496800	Enhancers	Right Atrium	heart
9	chr10:50496200-50497000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr10:50496200-50498000	Enhancers	Psoas Muscle	Psoas
11	chr10:50496400-50496800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr10:50496400-50497000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr10:50496400-50498000	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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