Variant report

Variant	rs73305870
Chromosome Location	chr10:50486407-50486408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50465169..50466715-chr10:50486145..50487685,2	K562	blood:
2	chr10:50486341..50490771-chr10:50506621..50509416,6	K562	blood:

Variant related genes	Relation type
ENSG00000177354	Chromatin interaction
ENSG00000236208	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs7077519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7081089	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301697	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305855	1.00[AMR][1000 genomes]
rs73305894	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7899869	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50481400-50486800	Weak transcription	Osteobl	bone
2	chr10:50481600-50486800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:50481800-50486600	Weak transcription	HSMM	muscle
4	chr10:50481800-50486800	Weak transcription	NHDF-Ad	bronchial
5	chr10:50482200-50487400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:50482400-50487600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:50484200-50486800	Enhancers	Fetal Heart	heart
8	chr10:50485200-50488400	Enhancers	Left Ventricle	heart
9	chr10:50485600-50487400	Enhancers	K562	blood
10	chr10:50485600-50488400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:50485600-50488400	Enhancers	Fetal Muscle Leg	muscle
12	chr10:50485600-50488400	Enhancers	Right Ventricle	heart
13	chr10:50485800-50488200	Enhancers	Psoas Muscle	Psoas
14	chr10:50485800-50488200	Enhancers	Right Atrium	heart
15	chr10:50485800-50489200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr10:50485800-50495000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr10:50486000-50487000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr10:50486000-50490400	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr10:50486200-50487000	Enhancers	Fetal Muscle Trunk	muscle
20	chr10:50486200-50488200	Enhancers	HSMMtube	muscle
21	chr10:50486400-50486800	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr10:50486400-50487800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:50486400-50488000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:50486400-50488400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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