Variant report

Variant	rs73323112
Chromosome Location	chr10:97241931-97241932
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs58762219	1.00[AMR][1000 genomes]
rs6583999	1.00[AMR][1000 genomes]
rs7083926	1.00[AMR][1000 genomes]
rs73319268	1.00[AMR][1000 genomes]
rs73319288	1.00[AMR][1000 genomes]
rs73321237	1.00[AMR][1000 genomes]
rs73321241	1.00[AMR][1000 genomes]
rs73321262	1.00[AMR][1000 genomes]
rs73323107	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73323119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73323126	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7902266	1.00[AMR][1000 genomes]
rs7922662	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045002	chr10:97214418-97250630	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97226400-97242600	Enhancers	Fetal Intestine Small	intestine
2	chr10:97232000-97242600	Enhancers	Fetal Intestine Large	intestine
3	chr10:97232400-97242800	Enhancers	Liver	Liver
4	chr10:97233600-97242000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr10:97233600-97242000	Enhancers	Brain Angular Gyrus	brain
6	chr10:97233600-97242600	Enhancers	Brain Anterior Caudate	brain
7	chr10:97233600-97242800	Enhancers	Brain Cingulate Gyrus	brain
8	chr10:97233600-97242800	Enhancers	HSMM	muscle
9	chr10:97234000-97242800	Enhancers	Fetal Muscle Leg	muscle
10	chr10:97234400-97242400	Enhancers	HSMMtube	muscle
11	chr10:97236800-97242800	Enhancers	Left Ventricle	heart
12	chr10:97237200-97242800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr10:97237200-97243000	Enhancers	HepG2	liver
14	chr10:97237200-97254000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:97238200-97242600	Weak transcription	Small Intestine	intestine
16	chr10:97238200-97242800	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr10:97238400-97242800	Enhancers	Brain Hippocampus Middle	brain
18	chr10:97238600-97242600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:97239600-97260800	Weak transcription	Brain Germinal Matrix	brain
20	chr10:97239800-97242000	Enhancers	Lung	lung
21	chr10:97239800-97242200	Enhancers	Stomach Mucosa	stomach
22	chr10:97239800-97242600	Enhancers	Psoas Muscle	Psoas
23	chr10:97240200-97242400	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr10:97240400-97242200	Flanking Active TSS	Stomach Smooth Muscle	stomach
25	chr10:97240600-97242000	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr10:97240600-97242400	Enhancers	Colon Smooth Muscle	Colon
27	chr10:97240600-97242600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr10:97240600-97242600	Enhancers	Pancreas	Pancrea
29	chr10:97240600-97243000	Enhancers	Rectal Smooth Muscle	rectum
30	chr10:97240600-97244800	Weak transcription	K562	blood
31	chr10:97240600-97245000	Weak transcription	Hela-S3	cervix
32	chr10:97240600-97253000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:97240800-97242600	Enhancers	Fetal Heart	heart
34	chr10:97240800-97242800	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr10:97240800-97242800	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr10:97240800-97244800	Weak transcription	HUVEC	blood vessel
37	chr10:97240800-97248800	Weak transcription	Fetal Brain Female	brain
38	chr10:97240800-97253400	Weak transcription	Duodenum Mucosa	Duodenum
39	chr10:97241000-97242200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr10:97241000-97244400	Weak transcription	Placenta	Placenta
41	chr10:97241000-97244600	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr10:97241000-97247200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr10:97241000-97260600	Weak transcription	Fetal Muscle Trunk	muscle
44	chr10:97241200-97242200	Weak transcription	Right Atrium	heart
45	chr10:97241200-97242200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr10:97241400-97242400	Weak transcription	Brain Substantia Nigra	brain
47	chr10:97241400-97245000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr10:97241400-97245000	Weak transcription	Gastric	stomach
49	chr10:97241400-97245400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr10:97241400-97245600	Weak transcription	Right Ventricle	heart

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