Variant report

Variant	rs73334651
Chromosome Location	chr17:60022883-60022884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:60013931..60017692-chr17:60021197..60024517,4	MCF-7	breast:
2	chr17:60022264..60023919-chr17:60028243..60030699,2	K562	blood:
3	chr17:60016210..60017855-chr17:60020584..60023431,3	K562	blood:
4	chr17:60001930..60007756-chr17:60014153..60029774,25	MCF-7	breast:
5	chr17:60021657..60023404-chr17:60145531..60148191,2	MCF-7	breast:
6	chr17:60022419..60025195-chr17:60026545..60029743,3	K562	blood:
7	chr17:60002364..60005193-chr17:60021870..60024637,2	K562	blood:
8	chr17:60002364..60006048-chr17:60020807..60024637,3	K562	blood:
9	chr17:60020965..60024852-chr17:60134621..60138471,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000108506	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs4531801	1.00[AFR][1000 genomes]
rs57185107	1.00[AFR][1000 genomes]
rs57882344	1.00[AFR][1000 genomes]
rs58969307	1.00[AFR][1000 genomes]
rs59950875	1.00[AFR][1000 genomes]
rs60371870	1.00[AFR][1000 genomes]
rs60520625	1.00[AFR][1000 genomes]
rs60624850	1.00[AFR][1000 genomes]
rs60734042	1.00[AFR][1000 genomes]
rs60883751	1.00[AFR][1000 genomes]
rs61333147	1.00[AFR][1000 genomes]
rs61525118	1.00[AFR][1000 genomes]
rs73332529	0.90[AFR][1000 genomes]
rs73332531	0.90[AFR][1000 genomes]
rs73332532	0.90[AFR][1000 genomes]
rs73332535	0.90[AFR][1000 genomes]
rs73332536	0.90[AFR][1000 genomes]
rs73332538	0.90[AFR][1000 genomes]
rs73332540	0.90[AFR][1000 genomes]
rs73332544	0.90[AFR][1000 genomes]
rs73332546	0.90[AFR][1000 genomes]
rs73332552	0.90[AFR][1000 genomes]
rs73332559	1.00[AFR][1000 genomes]
rs73332562	1.00[AFR][1000 genomes]
rs73332563	1.00[AFR][1000 genomes]
rs73332589	1.00[AFR][1000 genomes]
rs73332592	1.00[AFR][1000 genomes]
rs73332602	1.00[AFR][1000 genomes]
rs73334603	1.00[AFR][1000 genomes]
rs73334608	1.00[AFR][1000 genomes]
rs73334628	1.00[AFR][1000 genomes]
rs73334639	1.00[AFR][1000 genomes]
rs73334640	1.00[AFR][1000 genomes]
rs73334641	1.00[AFR][1000 genomes]
rs73334645	1.00[AFR][1000 genomes]
rs73334646	1.00[AFR][1000 genomes]
rs73334652	1.00[AFR][1000 genomes]
rs73334653	1.00[AFR][1000 genomes]
rs73334655	1.00[AFR][1000 genomes]
rs73334666	1.00[AFR][1000 genomes]
rs73334668	1.00[AFR][1000 genomes]
rs73334669	1.00[AFR][1000 genomes]
rs73334673	0.81[AFR][1000 genomes]
rs73334679	1.00[AFR][1000 genomes]
rs73334682	1.00[AFR][1000 genomes]
rs73334684	1.00[AFR][1000 genomes]
rs73334687	1.00[AFR][1000 genomes]
rs73334688	1.00[AFR][1000 genomes]
rs73334690	1.00[AFR][1000 genomes]
rs73334691	1.00[AFR][1000 genomes]
rs73334693	1.00[AFR][1000 genomes]
rs73334698	1.00[AFR][1000 genomes]
rs73334700	1.00[AFR][1000 genomes]
rs73334701	1.00[AFR][1000 genomes]
rs73334702	1.00[AFR][1000 genomes]
rs73336406	1.00[AFR][1000 genomes]
rs73336409	1.00[AFR][1000 genomes]
rs73336410	1.00[AFR][1000 genomes]
rs73336411	1.00[AFR][1000 genomes]
rs73336412	1.00[AFR][1000 genomes]
rs73336415	1.00[AFR][1000 genomes]
rs73336423	1.00[AFR][1000 genomes]
rs73336428	1.00[AFR][1000 genomes]
rs73336429	1.00[AFR][1000 genomes]
rs73336431	1.00[AFR][1000 genomes]
rs73336432	1.00[AFR][1000 genomes]
rs73336433	1.00[AFR][1000 genomes]
rs73336434	1.00[AFR][1000 genomes]
rs73336446	1.00[AFR][1000 genomes]
rs73336448	1.00[AFR][1000 genomes]
rs73336461	1.00[AFR][1000 genomes]
rs73336464	1.00[AFR][1000 genomes]
rs73336465	1.00[AFR][1000 genomes]
rs73336466	1.00[AFR][1000 genomes]
rs73336476	0.90[AFR][1000 genomes]
rs73336480	0.90[AFR][1000 genomes]
rs73338415	0.81[AFR][1000 genomes]
rs73338428	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv916786	chr17:59890834-60103687	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60006000-60023000	Weak transcription	Brain Hippocampus Middle	brain
2	chr17:60006000-60023600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr17:60012800-60023800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr17:60014200-60030000	Weak transcription	Stomach Mucosa	stomach
5	chr17:60014600-60024400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr17:60014800-60023800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr17:60014800-60028000	Weak transcription	Colonic Mucosa	Colon
8	chr17:60015400-60023400	Weak transcription	NHLF	lung
9	chr17:60015400-60023800	Weak transcription	Fetal Intestine Small	intestine
10	chr17:60016000-60023600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr17:60016000-60029800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr17:60016200-60023800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr17:60016200-60024200	Weak transcription	Lung	lung
14	chr17:60016400-60027800	Weak transcription	Right Ventricle	heart
15	chr17:60016600-60023200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr17:60017000-60027800	Weak transcription	Gastric	stomach
17	chr17:60017200-60023000	Weak transcription	Fetal Kidney	kidney
18	chr17:60017400-60026600	Weak transcription	Spleen	Spleen
19	chr17:60017600-60023000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr17:60017600-60023600	Strong transcription	A549	lung
21	chr17:60017600-60033800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr17:60017800-60033600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr17:60017800-60050400	Strong transcription	Adipose Nuclei	Adipose
24	chr17:60018000-60046800	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr17:60018000-60072800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr17:60018000-60073400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr17:60018200-60034400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr17:60018400-60034000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr17:60018400-60034000	Strong transcription	Placenta	Placenta
30	chr17:60018600-60047000	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr17:60018600-60047200	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr17:60018600-60072600	Strong transcription	Fetal Thymus	thymus
33	chr17:60018800-60073600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr17:60019000-60040000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr17:60019200-60023800	Weak transcription	Fetal Stomach	stomach
36	chr17:60019200-60023800	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr17:60019200-60026600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr17:60019200-60051600	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr17:60019400-60025600	Strong transcription	Hela-S3	cervix
40	chr17:60019400-60030400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr17:60019600-60033800	Strong transcription	NH-A	brain
42	chr17:60019600-60034200	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr17:60019600-60050600	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr17:60020200-60023200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr17:60020200-60050400	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr17:60020400-60023600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr17:60020400-60026600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr17:60020400-60050600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr17:60020400-60073200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr17:60020600-60023000	Weak transcription	Fetal Muscle Leg	muscle

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