Variant report

Variant	rs73334698
Chromosome Location	chr17:60080247-60080248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:59984959..59987360-chr17:60080196..60082621,4	MCF-7	breast:
2	chr17:59940471..59943212-chr17:60078029..60080635,3	MCF-7	breast:
3	chr17:59981901..59984407-chr17:60078933..60081120,2	MCF-7	breast:
4	chr17:60076983..60082138-chr20:45769683..45772902,13	MCF-7	breast:
5	chr17:60076388..60082656-chr17:60092955..60097043,6	MCF-7	breast:
6	chr17:60070989..60072709-chr17:60080027..60082957,3	MCF-7	breast:
7	chr17:60078768..60080759-chr17:60137398..60140129,2	MCF-7	breast:
8	chr17:60000293..60003347-chr17:60077585..60080426,3	MCF-7	breast:
9	chr17:59488507..59492076-chr17:60078384..60081722,3	MCF-7	breast:
10	chr17:59981896..59983905-chr17:60078563..60081371,3	MCF-7	breast:
11	chr17:60077016..60081404-chr20:45777235..45780587,12	MCF-7	breast:
12	chr17:60079916..60082717-chr20:54154638..54157436,18	MCF-7	breast:
13	chr11:62607588..62609568-chr17:60079184..60081818,2	MCF-7	breast:
14	chr17:60078981..60081149-chr20:45785304..45788178,3	MCF-7	breast:
15	chr17:60058728..60061082-chr17:60079953..60082056,2	MCF-7	breast:
16	chr17:60076959..60080774-chr20:45777268..45780577,16	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000133316	Chromatin interaction
ENSG00000267280	Chromatin interaction
ENSG00000187013	Chromatin interaction
ENSG00000136492	Chromatin interaction
ENSG00000221302	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs4531801	1.00[AFR][1000 genomes]
rs57185107	1.00[AFR][1000 genomes]
rs57882344	1.00[AFR][1000 genomes]
rs58969307	1.00[AFR][1000 genomes]
rs59950875	1.00[AFR][1000 genomes]
rs60371870	1.00[AFR][1000 genomes]
rs60520625	1.00[AFR][1000 genomes]
rs60624850	1.00[AFR][1000 genomes]
rs60734042	1.00[AFR][1000 genomes]
rs60883751	1.00[AFR][1000 genomes]
rs61333147	1.00[AFR][1000 genomes]
rs61525118	1.00[AFR][1000 genomes]
rs73332529	0.90[AFR][1000 genomes]
rs73332531	0.90[AFR][1000 genomes]
rs73332532	0.90[AFR][1000 genomes]
rs73332535	0.90[AFR][1000 genomes]
rs73332536	0.90[AFR][1000 genomes]
rs73332538	0.90[AFR][1000 genomes]
rs73332540	0.90[AFR][1000 genomes]
rs73332544	0.90[AFR][1000 genomes]
rs73332546	0.90[AFR][1000 genomes]
rs73332552	0.90[AFR][1000 genomes]
rs73332559	1.00[AFR][1000 genomes]
rs73332562	1.00[AFR][1000 genomes]
rs73332563	1.00[AFR][1000 genomes]
rs73332589	1.00[AFR][1000 genomes]
rs73332592	1.00[AFR][1000 genomes]
rs73332602	1.00[AFR][1000 genomes]
rs73334603	1.00[AFR][1000 genomes]
rs73334608	1.00[AFR][1000 genomes]
rs73334628	1.00[AFR][1000 genomes]
rs73334639	1.00[AFR][1000 genomes]
rs73334640	1.00[AFR][1000 genomes]
rs73334641	1.00[AFR][1000 genomes]
rs73334645	1.00[AFR][1000 genomes]
rs73334646	1.00[AFR][1000 genomes]
rs73334651	1.00[AFR][1000 genomes]
rs73334652	1.00[AFR][1000 genomes]
rs73334653	1.00[AFR][1000 genomes]
rs73334655	1.00[AFR][1000 genomes]
rs73334666	1.00[AFR][1000 genomes]
rs73334668	1.00[AFR][1000 genomes]
rs73334669	1.00[AFR][1000 genomes]
rs73334673	0.81[AFR][1000 genomes]
rs73334679	1.00[AFR][1000 genomes]
rs73334682	1.00[AFR][1000 genomes]
rs73334684	1.00[AFR][1000 genomes]
rs73334687	1.00[AFR][1000 genomes]
rs73334688	1.00[AFR][1000 genomes]
rs73334690	1.00[AFR][1000 genomes]
rs73334691	1.00[AFR][1000 genomes]
rs73334693	1.00[AFR][1000 genomes]
rs73334700	1.00[AFR][1000 genomes]
rs73334701	1.00[AFR][1000 genomes]
rs73334702	1.00[AFR][1000 genomes]
rs73336406	1.00[AFR][1000 genomes]
rs73336409	1.00[AFR][1000 genomes]
rs73336410	1.00[AFR][1000 genomes]
rs73336411	1.00[AFR][1000 genomes]
rs73336412	1.00[AFR][1000 genomes]
rs73336415	1.00[AFR][1000 genomes]
rs73336423	1.00[AFR][1000 genomes]
rs73336428	1.00[AFR][1000 genomes]
rs73336429	1.00[AFR][1000 genomes]
rs73336431	1.00[AFR][1000 genomes]
rs73336432	1.00[AFR][1000 genomes]
rs73336433	1.00[AFR][1000 genomes]
rs73336434	1.00[AFR][1000 genomes]
rs73336446	1.00[AFR][1000 genomes]
rs73336448	1.00[AFR][1000 genomes]
rs73336461	1.00[AFR][1000 genomes]
rs73336464	1.00[AFR][1000 genomes]
rs73336465	1.00[AFR][1000 genomes]
rs73336466	1.00[AFR][1000 genomes]
rs73336476	0.90[AFR][1000 genomes]
rs73336480	0.90[AFR][1000 genomes]
rs73338415	0.81[AFR][1000 genomes]
rs73338428	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv916786	chr17:59890834-60103687	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1062816	chr17:60074670-60470465	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
4	esv2753884	chr17:60077852-60190630	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60021200-60097000	Strong transcription	Dnd41	blood
2	chr17:60025400-60107600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr17:60033000-60128400	Weak transcription	Stomach Mucosa	stomach
4	chr17:60042800-60105200	Weak transcription	Psoas Muscle	Psoas
5	chr17:60048800-60097600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr17:60050200-60100800	Weak transcription	Small Intestine	intestine
7	chr17:60059000-60088000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr17:60060400-60081800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr17:60060400-60086800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr17:60060400-60088000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr17:60060400-60090600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr17:60060400-60096200	Weak transcription	Fetal Brain Male	brain
13	chr17:60060400-60098800	Weak transcription	Gastric	stomach
14	chr17:60060400-60099800	Weak transcription	Aorta	Aorta
15	chr17:60061600-60099600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr17:60062400-60081600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr17:60062400-60086400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr17:60062400-60106800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr17:60064800-60088200	Weak transcription	Pancreas	Pancrea
20	chr17:60067400-60081600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr17:60067800-60086400	Weak transcription	HMEC	breast
22	chr17:60068400-60081600	Weak transcription	Fetal Kidney	kidney
23	chr17:60069200-60107600	Weak transcription	Spleen	Spleen
24	chr17:60069400-60082600	Weak transcription	Brain Germinal Matrix	brain
25	chr17:60069400-60087000	Weak transcription	Left Ventricle	heart
26	chr17:60069600-60081600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr17:60069600-60099000	Weak transcription	Colonic Mucosa	Colon
28	chr17:60069800-60087800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr17:60070000-60081400	Weak transcription	Hela-S3	cervix
30	chr17:60070200-60088000	Weak transcription	NHEK	skin
31	chr17:60070800-60086400	Weak transcription	Fetal Brain Female	brain
32	chr17:60071000-60083200	Weak transcription	Esophagus	oesophagus
33	chr17:60071600-60082800	Weak transcription	Lung	lung
34	chr17:60071800-60082000	Weak transcription	Thymus	Thymus
35	chr17:60071800-60082200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr17:60072200-60081800	Weak transcription	Fetal Muscle Trunk	muscle
37	chr17:60072200-60087800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr17:60072400-60081800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr17:60072400-60082200	Weak transcription	Fetal Stomach	stomach
40	chr17:60072400-60082400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr17:60072400-60082600	Weak transcription	Fetal Muscle Leg	muscle
42	chr17:60072400-60087000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr17:60072400-60100600	Weak transcription	Right Ventricle	heart
44	chr17:60072600-60081200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr17:60072600-60081600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr17:60072600-60081600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr17:60072600-60081800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr17:60072600-60082000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr17:60072600-60082400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr17:60072600-60082600	Weak transcription	H1 Cell Line	embryonic stem cell

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