Variant report

Variant	rs73336433
Chromosome Location	chr17:60114889-60114890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:60107140..60109283-chr17:60113223..60115385,2	MCF-7	breast:
2	chr17:60109100..60115940-chr17:60139087..60144589,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108510	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs4531801	1.00[AFR][1000 genomes]
rs57185107	1.00[AFR][1000 genomes]
rs57882344	1.00[AFR][1000 genomes]
rs58969307	1.00[AFR][1000 genomes]
rs59950875	1.00[AFR][1000 genomes]
rs60371870	1.00[AFR][1000 genomes]
rs60520625	1.00[AFR][1000 genomes]
rs60624850	1.00[AFR][1000 genomes]
rs60734042	1.00[AFR][1000 genomes]
rs60883751	1.00[AFR][1000 genomes]
rs61333147	1.00[AFR][1000 genomes]
rs61525118	1.00[AFR][1000 genomes]
rs73332529	0.90[AFR][1000 genomes]
rs73332531	0.90[AFR][1000 genomes]
rs73332532	0.90[AFR][1000 genomes]
rs73332535	0.90[AFR][1000 genomes]
rs73332536	0.90[AFR][1000 genomes]
rs73332538	0.90[AFR][1000 genomes]
rs73332540	0.90[AFR][1000 genomes]
rs73332544	0.90[AFR][1000 genomes]
rs73332546	0.90[AFR][1000 genomes]
rs73332552	0.90[AFR][1000 genomes]
rs73332559	1.00[AFR][1000 genomes]
rs73332562	1.00[AFR][1000 genomes]
rs73332563	1.00[AFR][1000 genomes]
rs73332589	1.00[AFR][1000 genomes]
rs73332592	1.00[AFR][1000 genomes]
rs73332602	1.00[AFR][1000 genomes]
rs73334603	1.00[AFR][1000 genomes]
rs73334608	1.00[AFR][1000 genomes]
rs73334628	1.00[AFR][1000 genomes]
rs73334639	1.00[AFR][1000 genomes]
rs73334640	1.00[AFR][1000 genomes]
rs73334641	1.00[AFR][1000 genomes]
rs73334645	1.00[AFR][1000 genomes]
rs73334646	1.00[AFR][1000 genomes]
rs73334651	1.00[AFR][1000 genomes]
rs73334652	1.00[AFR][1000 genomes]
rs73334653	1.00[AFR][1000 genomes]
rs73334655	1.00[AFR][1000 genomes]
rs73334666	1.00[AFR][1000 genomes]
rs73334668	1.00[AFR][1000 genomes]
rs73334669	1.00[AFR][1000 genomes]
rs73334673	0.81[AFR][1000 genomes]
rs73334679	1.00[AFR][1000 genomes]
rs73334682	1.00[AFR][1000 genomes]
rs73334684	1.00[AFR][1000 genomes]
rs73334687	1.00[AFR][1000 genomes]
rs73334688	1.00[AFR][1000 genomes]
rs73334690	1.00[AFR][1000 genomes]
rs73334691	1.00[AFR][1000 genomes]
rs73334693	1.00[AFR][1000 genomes]
rs73334698	1.00[AFR][1000 genomes]
rs73334700	1.00[AFR][1000 genomes]
rs73334701	1.00[AFR][1000 genomes]
rs73334702	1.00[AFR][1000 genomes]
rs73336406	1.00[AFR][1000 genomes]
rs73336409	1.00[AFR][1000 genomes]
rs73336410	1.00[AFR][1000 genomes]
rs73336411	1.00[AFR][1000 genomes]
rs73336412	1.00[AFR][1000 genomes]
rs73336415	1.00[AFR][1000 genomes]
rs73336423	1.00[AFR][1000 genomes]
rs73336428	1.00[AFR][1000 genomes]
rs73336429	1.00[AFR][1000 genomes]
rs73336431	1.00[AFR][1000 genomes]
rs73336432	1.00[AFR][1000 genomes]
rs73336434	1.00[AFR][1000 genomes]
rs73336446	1.00[AFR][1000 genomes]
rs73336448	1.00[AFR][1000 genomes]
rs73336461	1.00[AFR][1000 genomes]
rs73336464	1.00[AFR][1000 genomes]
rs73336465	1.00[AFR][1000 genomes]
rs73336466	1.00[AFR][1000 genomes]
rs73336476	0.90[AFR][1000 genomes]
rs73336480	0.90[AFR][1000 genomes]
rs73338415	0.81[AFR][1000 genomes]
rs73338428	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv1062816	chr17:60074670-60470465	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	esv2753884	chr17:60077852-60190630	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	esv2755037	chr17:60086508-60386211	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60033000-60128400	Weak transcription	Stomach Mucosa	stomach
2	chr17:60074600-60123800	Weak transcription	Right Atrium	heart
3	chr17:60077200-60136800	Strong transcription	Fetal Thymus	thymus
4	chr17:60098600-60139200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr17:60098800-60135000	Strong transcription	Dnd41	blood
6	chr17:60099000-60134200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr17:60099400-60131000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr17:60099400-60139000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr17:60105600-60117600	Strong transcription	Fetal Intestine Small	intestine
10	chr17:60105600-60120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr17:60106000-60129800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr17:60108000-60115600	Weak transcription	Right Ventricle	heart
13	chr17:60108000-60117200	Weak transcription	Esophagus	oesophagus
14	chr17:60108000-60141400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr17:60108800-60139000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr17:60109000-60116600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr17:60109000-60119000	Weak transcription	Brain Germinal Matrix	brain
18	chr17:60109000-60119000	Weak transcription	Colonic Mucosa	Colon
19	chr17:60109000-60120200	Weak transcription	Small Intestine	intestine
20	chr17:60109000-60128600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr17:60109000-60141200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr17:60109600-60115400	Weak transcription	HUVEC	blood vessel
23	chr17:60110400-60123800	Weak transcription	Psoas Muscle	Psoas
24	chr17:60110600-60135200	Weak transcription	Aorta	Aorta
25	chr17:60110600-60139800	Weak transcription	Spleen	Spleen
26	chr17:60111000-60118400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr17:60111000-60120200	Weak transcription	Ovary	ovary
28	chr17:60111000-60130600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr17:60111000-60133800	Weak transcription	Pancreas	Pancrea
30	chr17:60111200-60115400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr17:60111200-60117200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr17:60111200-60117600	Weak transcription	Fetal Brain Female	brain
33	chr17:60111200-60120200	Weak transcription	Brain Anterior Caudate	brain
34	chr17:60111200-60122600	Weak transcription	HMEC	breast
35	chr17:60111200-60123600	Weak transcription	Brain Hippocampus Middle	brain
36	chr17:60111200-60129000	Weak transcription	Brain Angular Gyrus	brain
37	chr17:60111200-60140200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr17:60111400-60115400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr17:60111400-60116000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr17:60111400-60116200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr17:60111400-60117000	Weak transcription	Primary B cells from cord blood	blood
42	chr17:60111400-60117400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr17:60111400-60117400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr17:60111400-60118000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr17:60111400-60118000	Weak transcription	HSMM	muscle
46	chr17:60111400-60119800	Weak transcription	Primary T cells from cord blood	blood
47	chr17:60111400-60119800	Weak transcription	Fetal Lung	lung
48	chr17:60111400-60122200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr17:60111400-60122600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr17:60111400-60123000	Weak transcription	Colon Smooth Muscle	Colon

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