Variant report

Variant	rs73336476
Chromosome Location	chr17:60153011-60153012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:60152989..60156708-chr17:60160821..60162993,3	MCF-7	breast:
2	chr17:60143617..60145318-chr17:60151412..60154053,2	K562	blood:
3	chr17:60138388..60140363-chr17:60151078..60153588,2	K562	blood:
4	chr17:60141987..60144832-chr17:60151044..60153428,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108510	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs4531801	0.90[AFR][1000 genomes]
rs57185107	0.90[AFR][1000 genomes]
rs57882344	0.90[AFR][1000 genomes]
rs58969307	0.90[AFR][1000 genomes]
rs59950875	0.90[AFR][1000 genomes]
rs60371870	0.90[AFR][1000 genomes]
rs60520625	0.90[AFR][1000 genomes]
rs60624850	0.90[AFR][1000 genomes]
rs60734042	0.90[AFR][1000 genomes]
rs60883751	0.90[AFR][1000 genomes]
rs61333147	0.90[AFR][1000 genomes]
rs61525118	0.90[AFR][1000 genomes]
rs73332529	0.81[AFR][1000 genomes]
rs73332531	0.81[AFR][1000 genomes]
rs73332532	0.81[AFR][1000 genomes]
rs73332535	0.81[AFR][1000 genomes]
rs73332536	0.81[AFR][1000 genomes]
rs73332538	0.81[AFR][1000 genomes]
rs73332540	0.81[AFR][1000 genomes]
rs73332544	0.81[AFR][1000 genomes]
rs73332546	0.81[AFR][1000 genomes]
rs73332552	0.81[AFR][1000 genomes]
rs73332559	0.90[AFR][1000 genomes]
rs73332562	0.90[AFR][1000 genomes]
rs73332563	0.90[AFR][1000 genomes]
rs73332589	0.90[AFR][1000 genomes]
rs73332592	0.90[AFR][1000 genomes]
rs73332602	0.90[AFR][1000 genomes]
rs73334603	0.90[AFR][1000 genomes]
rs73334608	0.90[AFR][1000 genomes]
rs73334628	0.90[AFR][1000 genomes]
rs73334639	0.90[AFR][1000 genomes]
rs73334640	0.90[AFR][1000 genomes]
rs73334641	0.90[AFR][1000 genomes]
rs73334645	0.90[AFR][1000 genomes]
rs73334646	0.90[AFR][1000 genomes]
rs73334651	0.90[AFR][1000 genomes]
rs73334652	0.90[AFR][1000 genomes]
rs73334653	0.90[AFR][1000 genomes]
rs73334655	0.90[AFR][1000 genomes]
rs73334666	0.90[AFR][1000 genomes]
rs73334668	0.90[AFR][1000 genomes]
rs73334669	0.90[AFR][1000 genomes]
rs73334679	0.90[AFR][1000 genomes]
rs73334682	0.90[AFR][1000 genomes]
rs73334684	0.90[AFR][1000 genomes]
rs73334687	0.90[AFR][1000 genomes]
rs73334688	0.90[AFR][1000 genomes]
rs73334690	0.90[AFR][1000 genomes]
rs73334691	0.90[AFR][1000 genomes]
rs73334693	0.90[AFR][1000 genomes]
rs73334698	0.90[AFR][1000 genomes]
rs73334700	0.90[AFR][1000 genomes]
rs73334701	0.90[AFR][1000 genomes]
rs73334702	0.90[AFR][1000 genomes]
rs73336406	0.90[AFR][1000 genomes]
rs73336409	0.90[AFR][1000 genomes]
rs73336410	0.90[AFR][1000 genomes]
rs73336411	0.90[AFR][1000 genomes]
rs73336412	0.90[AFR][1000 genomes]
rs73336415	0.90[AFR][1000 genomes]
rs73336423	0.90[AFR][1000 genomes]
rs73336428	0.90[AFR][1000 genomes]
rs73336429	0.90[AFR][1000 genomes]
rs73336431	0.90[AFR][1000 genomes]
rs73336432	0.90[AFR][1000 genomes]
rs73336433	0.90[AFR][1000 genomes]
rs73336434	0.90[AFR][1000 genomes]
rs73336446	0.90[AFR][1000 genomes]
rs73336448	0.90[AFR][1000 genomes]
rs73336461	0.90[AFR][1000 genomes]
rs73336464	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73336465	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73336466	0.90[AFR][1000 genomes]
rs73336480	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062816	chr17:60074670-60470465	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	esv2753884	chr17:60077852-60190630	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv2755037	chr17:60086508-60386211	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3415630	chr17:60124819-60401635	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60147400-60153600	Weak transcription	Liver	Liver
2	chr17:60152400-60153200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr17:60152400-60155200	Enhancers	Fetal Intestine Small	intestine
4	chr17:60152600-60153200	Enhancers	GM12878-XiMat	blood
5	chr17:60152600-60154000	Enhancers	HepG2	liver
6	chr17:60152800-60153200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr17:60153000-60154400	Weak transcription	Pancreas	Pancrea
8	chr17:60153000-60154400	Weak transcription	K562	blood

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