Variant report

Variant	rs73335024
Chromosome Location	chr5:126907606-126907607
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10043977	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10063277	1.00[AMR][1000 genomes]
rs10063666	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10155548	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10155578	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10452551	1.00[AMR][1000 genomes]
rs10478768	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13361500	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13436184	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13436211	0.89[AFR][1000 genomes]
rs13436719	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28439085	1.00[AMR][1000 genomes]
rs28514390	1.00[AMR][1000 genomes]
rs28535011	1.00[AMR][1000 genomes]
rs58086571	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61631930	1.00[AMR][1000 genomes]
rs73331301	1.00[AMR][1000 genomes]
rs73333106	1.00[AMR][1000 genomes]
rs73333162	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73335012	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73335031	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73335039	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73335045	1.00[AMR][1000 genomes]
rs73783903	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786118	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9327441	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9327442	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9327443	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9327444	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9327445	1.00[AMR][1000 genomes]
rs9327446	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019821	chr5:126658200-126934917	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv537894	chr5:126658200-126934917	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv830478	chr5:126721368-126937408	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv830479	chr5:126849254-127053121	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv4990	chr5:126899519-126920342	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126905600-126908600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:126906200-126909200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:126907000-126907800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:126907000-126907800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr5:126907000-126908000	Enhancers	Colon Smooth Muscle	Colon
6	chr5:126907000-126908200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:126907000-126908800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:126907200-126907800	Flanking Active TSS	GM12878-XiMat	blood
9	chr5:126907600-126908400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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