Variant report

Variant	rs73786118
Chromosome Location	chr5:126853805-126853806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:126853642..126856280-chr5:128795385..128797778,2	MCF-7	breast:
2	chr5:126846345..126849372-chr5:126851535..126854073,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145808	Chromatin interaction
ENSG00000249421	Chromatin interaction
ENSG00000250859	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10043977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10063277	1.00[AMR][1000 genomes]
rs10063666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10155548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10155578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10452551	1.00[AMR][1000 genomes]
rs10478768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13361500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13436184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13436211	1.00[AFR][1000 genomes]
rs13436719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28439085	1.00[AMR][1000 genomes]
rs28514390	1.00[AMR][1000 genomes]
rs28535011	1.00[AMR][1000 genomes]
rs57261222	1.00[AMR][1000 genomes]
rs58086571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61631930	1.00[AMR][1000 genomes]
rs73331301	1.00[AMR][1000 genomes]
rs73333106	1.00[AMR][1000 genomes]
rs73333162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73335012	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73335024	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73335031	1.00[AMR][1000 genomes]
rs73335039	1.00[AMR][1000 genomes]
rs73335045	1.00[AMR][1000 genomes]
rs73783903	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73785582	1.00[AMR][1000 genomes]
rs73785583	1.00[AMR][1000 genomes]
rs9327441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9327442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9327443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9327444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9327445	1.00[AMR][1000 genomes]
rs9327446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019821	chr5:126658200-126934917	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv537894	chr5:126658200-126934917	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv830478	chr5:126721368-126937408	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv830479	chr5:126849254-127053121	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126852600-126854000	Active TSS	Liver	Liver
2	chr5:126852600-126854000	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr5:126852600-126854400	Active TSS	A549	lung
4	chr5:126852600-126854600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:126852800-126854000	Active TSS	Primary T cells from cord blood	blood
6	chr5:126852800-126854200	Active TSS	Brain Cingulate Gyrus	brain
7	chr5:126852800-126854200	Active TSS	Brain Substantia Nigra	brain
8	chr5:126852800-126854200	Active TSS	Fetal Lung	lung
9	chr5:126852800-126854200	Active TSS	Lung	lung
10	chr5:126852800-126854400	Active TSS	H9 Cell Line	embryonic stem cell
11	chr5:126852800-126854400	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr5:126852800-126854400	Active TSS	Cortex derived primary cultured neurospheres	brain
13	chr5:126852800-126854400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr5:126852800-126854400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
15	chr5:126852800-126854400	Active TSS	Brain Angular Gyrus	brain
16	chr5:126852800-126854400	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr5:126852800-126854400	Active TSS	Colonic Mucosa	Colon
18	chr5:126852800-126854400	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr5:126852800-126854400	Active TSS	Fetal Heart	heart
20	chr5:126852800-126854400	Active TSS	Fetal Kidney	kidney
21	chr5:126852800-126854400	Active TSS	Right Ventricle	heart
22	chr5:126852800-126854400	Active TSS	Stomach Mucosa	stomach
23	chr5:126852800-126854600	Active TSS	H1 Cell Line	embryonic stem cell
24	chr5:126852800-126854600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr5:126852800-126854600	Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr5:126852800-126854600	Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr5:126852800-126854600	Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr5:126852800-126854600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr5:126852800-126854600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr5:126852800-126854600	Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr5:126852800-126854600	Flanking Active TSS	Primary hematopoietic stem cells	blood
32	chr5:126852800-126854600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr5:126852800-126854600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr5:126852800-126854600	Active TSS	Fetal Brain Male	brain
35	chr5:126852800-126854600	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr5:126852800-126854600	Active TSS	Placenta	Placenta
37	chr5:126852800-126854600	Active TSS	Ovary	ovary
38	chr5:126852800-126854600	Active TSS	Placenta Amnion	Placenta Amnion
39	chr5:126852800-126854600	Active TSS	Right Atrium	heart
40	chr5:126852800-126854600	Active TSS	HSMM	muscle
41	chr5:126852800-126854800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr5:126852800-126854800	Active TSS	HUES6 Cell Line	embryonic stem cell
43	chr5:126852800-126855000	Active TSS	ES-I3 Cell Line	embryonic stem cell
44	chr5:126852800-126855000	Active TSS	Fetal Intestine Large	intestine
45	chr5:126852800-126855000	Active TSS	Psoas Muscle	Psoas
46	chr5:126852800-126855600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr5:126853000-126854000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
48	chr5:126853000-126854200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr5:126853000-126854200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr5:126853000-126854200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links