Variant report

Variant	rs10063277
Chromosome Location	chr5:126834286-126834287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:126828717..126830887-chr5:126833409..126835592,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10043977	1.00[AMR][1000 genomes]
rs10055438	1.00[MEX][hapmap]
rs10063666	1.00[AMR][1000 genomes]
rs10155548	1.00[AMR][1000 genomes]
rs10155578	1.00[AMR][1000 genomes]
rs10452551	1.00[AMR][1000 genomes]
rs10478768	1.00[AMR][1000 genomes]
rs13361500	1.00[AMR][1000 genomes]
rs13436184	1.00[AMR][1000 genomes]
rs13436719	1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[AMR][1000 genomes]
rs17165082	1.00[MEX][hapmap]
rs28439085	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28514390	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28535011	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57261222	1.00[AMR][1000 genomes]
rs58086571	1.00[AMR][1000 genomes]
rs60337565	1.00[AMR][1000 genomes]
rs61631930	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73331301	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333106	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333162	1.00[AMR][1000 genomes]
rs73335012	1.00[AMR][1000 genomes]
rs73335024	1.00[AMR][1000 genomes]
rs73335031	1.00[AMR][1000 genomes]
rs73335039	1.00[AMR][1000 genomes]
rs73335045	1.00[AMR][1000 genomes]
rs73783903	1.00[AMR][1000 genomes]
rs73785582	1.00[AMR][1000 genomes]
rs73785583	1.00[AMR][1000 genomes]
rs73786118	1.00[AMR][1000 genomes]
rs9327441	1.00[AMR][1000 genomes]
rs9327442	1.00[AMR][1000 genomes]
rs9327443	1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[AMR][1000 genomes]
rs9327444	1.00[AMR][1000 genomes]
rs9327445	1.00[AMR][1000 genomes]
rs9327446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019821	chr5:126658200-126934917	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv537894	chr5:126658200-126934917	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv830478	chr5:126721368-126937408	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126833600-126835200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:126834000-126834400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr5:126834000-126836000	Weak transcription	Fetal Brain Male	brain
4	chr5:126834200-126834600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:126834200-126834600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links