Variant report

Variant	rs73785582
Chromosome Location	chr5:126671068-126671069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:126669402..126672164-chr5:126676227..126678289,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10043977	1.00[AMR][1000 genomes]
rs10063277	1.00[AMR][1000 genomes]
rs10063666	1.00[AMR][1000 genomes]
rs10478768	1.00[AMR][1000 genomes]
rs28439085	1.00[AMR][1000 genomes]
rs28514390	1.00[AMR][1000 genomes]
rs28535011	1.00[AMR][1000 genomes]
rs57261222	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60337565	1.00[AMR][1000 genomes]
rs61631930	1.00[AMR][1000 genomes]
rs73331301	1.00[AMR][1000 genomes]
rs73333106	1.00[AMR][1000 genomes]
rs73333162	1.00[AMR][1000 genomes]
rs73785583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786118	1.00[AMR][1000 genomes]
rs9327441	1.00[AMR][1000 genomes]
rs9327442	1.00[AMR][1000 genomes]
rs9327443	1.00[AMR][1000 genomes]
rs9327444	1.00[AMR][1000 genomes]
rs9327445	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1019821	chr5:126658200-126934917	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv537894	chr5:126658200-126934917	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126648000-126674800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:126656600-126673400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:126660400-126671200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:126662800-126672800	Weak transcription	Fetal Brain Female	brain
5	chr5:126663200-126673600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:126663400-126690200	Weak transcription	Fetal Brain Male	brain
7	chr5:126665600-126671200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:126665800-126671200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr5:126666200-126679000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:126666600-126673400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:126666800-126689200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:126667600-126673200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr5:126668000-126687200	Weak transcription	HSMM	muscle
14	chr5:126668200-126673200	Weak transcription	HSMMtube	muscle
15	chr5:126668800-126671200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr5:126669200-126674800	Weak transcription	Fetal Muscle Leg	muscle
17	chr5:126669400-126675000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr5:126669600-126673200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr5:126670000-126672800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr5:126670000-126672800	Weak transcription	Brain Substantia Nigra	brain
21	chr5:126670200-126672400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr5:126670200-126672600	Weak transcription	Brain Hippocampus Middle	brain
23	chr5:126670200-126672800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr5:126670200-126673200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr5:126670200-126673200	Weak transcription	Brain Anterior Caudate	brain
26	chr5:126670400-126671600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr5:126670400-126673400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr5:126670800-126671200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr5:126670800-126671400	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr5:126671000-126671200	Genic enhancers	Brain Angular Gyrus	brain
31	chr5:126671000-126672600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr5:126671000-126674800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links