Variant report

Variant	rs10063666
Chromosome Location	chr5:126857570-126857571
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:126851024..126854935-chr5:126857550..126860318,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164244	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10043977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10063277	1.00[AMR][1000 genomes]
rs10155548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10155578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10452551	1.00[AMR][1000 genomes]
rs10478768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13361500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13436184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13436211	1.00[AFR][1000 genomes]
rs13436719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28439085	1.00[AMR][1000 genomes]
rs28514390	1.00[AMR][1000 genomes]
rs28535011	1.00[AMR][1000 genomes]
rs57261222	1.00[AMR][1000 genomes]
rs58086571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61631930	1.00[AMR][1000 genomes]
rs73331301	1.00[AMR][1000 genomes]
rs73333106	1.00[AMR][1000 genomes]
rs73333162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73335012	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73335024	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73335031	1.00[AMR][1000 genomes]
rs73335039	1.00[AMR][1000 genomes]
rs73335045	1.00[AMR][1000 genomes]
rs73783903	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73785582	1.00[AMR][1000 genomes]
rs73785583	1.00[AMR][1000 genomes]
rs73786118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9327441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9327442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9327443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9327444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9327445	1.00[AMR][1000 genomes]
rs9327446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019821	chr5:126658200-126934917	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv537894	chr5:126658200-126934917	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv830478	chr5:126721368-126937408	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv830479	chr5:126849254-127053121	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126854200-126858000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:126854200-126860200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:126854200-126860200	Weak transcription	Spleen	Spleen
4	chr5:126854400-126859200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:126854400-126859200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:126854400-126859600	Weak transcription	Colonic Mucosa	Colon
7	chr5:126854400-126860200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:126854400-126860200	Weak transcription	Esophagus	oesophagus
9	chr5:126854400-126861000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr5:126854400-126864800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:126854600-126858200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr5:126854600-126858600	Weak transcription	Placenta	Placenta
13	chr5:126854600-126858800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr5:126854600-126859000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr5:126854800-126859200	Weak transcription	Brain Substantia Nigra	brain
16	chr5:126854800-126859800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr5:126855000-126859200	Weak transcription	Brain Angular Gyrus	brain
18	chr5:126855200-126858200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr5:126855200-126858200	ZNF genes & repeats	GM12878-XiMat	blood
20	chr5:126855200-126858400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr5:126855200-126859000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr5:126855200-126859200	Weak transcription	Thymus	Thymus
23	chr5:126855200-126860400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr5:126855400-126857800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
25	chr5:126855400-126858800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr5:126855400-126859200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr5:126855400-126859200	Weak transcription	HSMMtube	muscle
28	chr5:126855400-126859400	Weak transcription	Brain Anterior Caudate	brain
29	chr5:126855400-126883200	Weak transcription	Stomach Mucosa	stomach
30	chr5:126855600-126857800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr5:126855600-126857800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr5:126855600-126858000	Weak transcription	Fetal Stomach	stomach
33	chr5:126855600-126858000	Strong transcription	Fetal Thymus	thymus
34	chr5:126855600-126858400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr5:126855600-126859000	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr5:126855600-126859000	Weak transcription	HUVEC	blood vessel
37	chr5:126855600-126860200	Weak transcription	Aorta	Aorta
38	chr5:126855600-126860200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr5:126855600-126860800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr5:126855600-126872200	Strong transcription	Fetal Intestine Large	intestine
41	chr5:126855800-126857800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr5:126855800-126858000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr5:126855800-126858000	Weak transcription	Pancreas	Pancrea
44	chr5:126855800-126858400	ZNF genes & repeats	Fetal Muscle Leg	muscle
45	chr5:126855800-126859000	Weak transcription	Hela-S3	cervix
46	chr5:126855800-126859200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr5:126855800-126859600	Weak transcription	Gastric	stomach
48	chr5:126855800-126859800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr5:126855800-126859800	Weak transcription	Right Ventricle	heart
50	chr5:126855800-126869400	Weak transcription	Psoas Muscle	Psoas

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