Variant report

Variant	rs73338987
Chromosome Location	chr14:80939210-80939211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10132086	1.00[AMR][1000 genomes]
rs10146016	1.00[AMR][1000 genomes]
rs58595334	1.00[AMR][1000 genomes]
rs58978494	1.00[AMR][1000 genomes]
rs60207137	1.00[AMR][1000 genomes]
rs73326635	1.00[AMR][1000 genomes]
rs73338970	1.00[AMR][1000 genomes]
rs73338973	1.00[AMR][1000 genomes]
rs73338983	1.00[AMR][1000 genomes]
rs73338991	1.00[AMR][1000 genomes]
rs73339001	1.00[AMR][1000 genomes]
rs8005950	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8014116	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15289	chr14:80900600-80939903	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80923400-80941200	Weak transcription	HSMM	muscle
2	chr14:80925200-80941400	Weak transcription	Psoas Muscle	Psoas
3	chr14:80936200-80941800	Strong transcription	Skeletal Muscle Male	skeletal muscle
4	chr14:80937000-80943000	Strong transcription	Skeletal Muscle Female	skeletal muscle
5	chr14:80938000-80940000	ZNF genes & repeats	Fetal Muscle Leg	muscle
6	chr14:80938400-80940400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr14:80938800-80941200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:80939000-80941400	ZNF genes & repeats	Dnd41	blood
9	chr14:80939200-80940000	ZNF genes & repeats	Thymus	Thymus
10	chr14:80939200-80980800	Weak transcription	Primary T cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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