Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:80916725..80918586-chr14:80920062..80922896,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10132086	1.00[AMR][1000 genomes]
rs10146016	1.00[AMR][1000 genomes]
rs17110847	1.00[EUR][1000 genomes]
rs2197983	1.00[EUR][1000 genomes]
rs56933416	1.00[EUR][1000 genomes]
rs58595334	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58978494	1.00[AMR][1000 genomes]
rs60207137	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326635	1.00[AMR][1000 genomes]
rs73326644	1.00[EUR][1000 genomes]
rs73326672	1.00[EUR][1000 genomes]
rs73328649	1.00[EUR][1000 genomes]
rs73328655	1.00[EUR][1000 genomes]
rs73328682	1.00[EUR][1000 genomes]
rs73330508	1.00[EUR][1000 genomes]
rs73330543	1.00[EUR][1000 genomes]
rs73338973	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73338983	1.00[AMR][1000 genomes]
rs73338987	1.00[AMR][1000 genomes]
rs73338991	1.00[AMR][1000 genomes]
rs73339001	1.00[AMR][1000 genomes]
rs74064297	1.00[EUR][1000 genomes]
rs8005950	1.00[AMR][1000 genomes]
rs8014116	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv15289	chr14:80900600-80939903	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv520394	chr14:80915590-80923468	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80919800-80921600	Weak transcription	HSMM	muscle
2	chr14:80920000-80921200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr14:80920600-80921200	Weak transcription	Skeletal Muscle Female	skeletal muscle

Quick Search: