Variant report

Variant	rs73338973
Chromosome Location	chr14:80924000-80924001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10132086	1.00[AMR][1000 genomes]
rs10137925	1.00[EUR][1000 genomes]
rs10146016	1.00[AMR][1000 genomes]
rs17110847	1.00[EUR][1000 genomes]
rs2197983	1.00[EUR][1000 genomes]
rs56933416	1.00[EUR][1000 genomes]
rs58595334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58978494	1.00[AMR][1000 genomes]
rs60207137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326635	1.00[AMR][1000 genomes]
rs73326644	1.00[EUR][1000 genomes]
rs73326672	1.00[EUR][1000 genomes]
rs73328649	1.00[EUR][1000 genomes]
rs73328655	1.00[EUR][1000 genomes]
rs73328682	1.00[EUR][1000 genomes]
rs73330508	1.00[EUR][1000 genomes]
rs73330543	1.00[EUR][1000 genomes]
rs73338970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73338983	1.00[AMR][1000 genomes]
rs73338987	1.00[AMR][1000 genomes]
rs73338991	1.00[AMR][1000 genomes]
rs73339001	1.00[AMR][1000 genomes]
rs74064297	1.00[EUR][1000 genomes]
rs8005950	1.00[AMR][1000 genomes]
rs8014116	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv15289	chr14:80900600-80939903	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80921200-80925200	Active TSS	Skeletal Muscle Male	skeletal muscle
2	chr14:80922200-80929200	Weak transcription	Fetal Muscle Leg	muscle
3	chr14:80923400-80941200	Weak transcription	HSMM	muscle
4	chr14:80923600-80924200	Weak transcription	Psoas Muscle	Psoas
5	chr14:80923800-80924600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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