Variant report

Variant	rs73338991
Chromosome Location	chr14:80942419-80942420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10132086	1.00[AMR][1000 genomes]
rs10146016	1.00[AMR][1000 genomes]
rs58595334	1.00[AMR][1000 genomes]
rs58978494	1.00[AMR][1000 genomes]
rs60207137	1.00[AMR][1000 genomes]
rs73326635	1.00[AMR][1000 genomes]
rs73338970	1.00[AMR][1000 genomes]
rs73338973	1.00[AMR][1000 genomes]
rs73338983	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73338987	1.00[AMR][1000 genomes]
rs73339001	1.00[AMR][1000 genomes]
rs8005950	1.00[AMR][1000 genomes]
rs8014116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8014846	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80937000-80943000	Strong transcription	Skeletal Muscle Female	skeletal muscle
2	chr14:80939200-80980800	Weak transcription	Primary T cells from cord blood	blood
3	chr14:80940400-80949200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:80941000-80942600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr14:80941000-80944800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr14:80941000-80944800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:80941000-80945000	Enhancers	NHDF-Ad	bronchial
8	chr14:80941200-80944000	Enhancers	Osteobl	bone
9	chr14:80941200-80945400	Enhancers	NHLF	lung
10	chr14:80941600-80942600	Weak transcription	HSMM	muscle
11	chr14:80941600-80948800	Weak transcription	Psoas Muscle	Psoas
12	chr14:80941600-80989200	Weak transcription	Left Ventricle	heart
13	chr14:80941800-80956800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr14:80942000-80943200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr14:80942200-80943400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr14:80942400-80942600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:80942400-80943400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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