Variant report

Variant	rs56933416
Chromosome Location	chr14:81094922-81094923
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10133617	1.00[EUR][1000 genomes]
rs10136245	1.00[EUR][1000 genomes]
rs10137925	1.00[EUR][1000 genomes]
rs10140445	1.00[EUR][1000 genomes]
rs10144134	1.00[EUR][1000 genomes]
rs10150034	1.00[EUR][1000 genomes]
rs10151027	1.00[EUR][1000 genomes]
rs10151108	1.00[EUR][1000 genomes]
rs10220319	1.00[EUR][1000 genomes]
rs1375628	1.00[EUR][1000 genomes]
rs17110847	1.00[EUR][1000 genomes]
rs17111025	1.00[EUR][1000 genomes]
rs2197983	1.00[EUR][1000 genomes]
rs28529404	1.00[EUR][1000 genomes]
rs28650423	1.00[EUR][1000 genomes]
rs327432	1.00[EUR][1000 genomes]
rs327437	1.00[EUR][1000 genomes]
rs57834417	1.00[EUR][1000 genomes]
rs58268321	1.00[EUR][1000 genomes]
rs58595334	1.00[EUR][1000 genomes]
rs60207137	1.00[EUR][1000 genomes]
rs61435414	1.00[EUR][1000 genomes]
rs73326644	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73328649	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73328655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73328682	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73330508	1.00[EUR][1000 genomes]
rs73330519	1.00[AMR][1000 genomes]
rs73330520	1.00[AMR][1000 genomes]
rs73330543	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73332696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73334792	1.00[EUR][1000 genomes]
rs73336577	1.00[EUR][1000 genomes]
rs73336590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73336591	1.00[EUR][1000 genomes]
rs73336597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73338156	1.00[EUR][1000 genomes]
rs73338970	1.00[EUR][1000 genomes]
rs73338973	1.00[EUR][1000 genomes]
rs73340517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73340530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73342506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73342522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73342549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73342552	1.00[EUR][1000 genomes]
rs73342554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74064297	1.00[EUR][1000 genomes]
rs8020092	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81083400-81109400	Weak transcription	Dnd41	blood
2	chr14:81087400-81104200	Weak transcription	HSMM	muscle
3	chr14:81088600-81099400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:81094400-81095400	Weak transcription	Fetal Intestine Small	intestine
5	chr14:81094600-81095000	Enhancers	Liver	Liver
6	chr14:81094600-81095400	Enhancers	Stomach Mucosa	stomach
7	chr14:81094800-81095000	Enhancers	Duodenum Mucosa	Duodenum
8	chr14:81094800-81095200	Enhancers	Small Intestine	intestine
9	chr14:81094800-81095800	Enhancers	Fetal Intestine Large	intestine

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