Variant report

Variant	rs28650423
Chromosome Location	chr14:81274173-81274174
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10133617	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10136245	1.00[EUR][1000 genomes]
rs10137925	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10140445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10143746	1.00[AMR][1000 genomes]
rs10144134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10150034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10150186	1.00[AMR][1000 genomes]
rs10151027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10151108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10220319	1.00[EUR][1000 genomes]
rs1375628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17110847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17111025	1.00[EUR][1000 genomes]
rs2197983	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28451204	1.00[AMR][1000 genomes]
rs28529404	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28605383	1.00[AMR][1000 genomes]
rs327432	1.00[EUR][1000 genomes]
rs327437	1.00[EUR][1000 genomes]
rs56933416	1.00[EUR][1000 genomes]
rs57834417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58040173	1.00[EUR][1000 genomes]
rs58133007	1.00[EUR][1000 genomes]
rs58268321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58594627	1.00[EUR][1000 genomes]
rs58679489	1.00[EUR][1000 genomes]
rs60977678	1.00[EUR][1000 genomes]
rs61435414	1.00[EUR][1000 genomes]
rs73328682	1.00[EUR][1000 genomes]
rs73330508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73330543	1.00[EUR][1000 genomes]
rs73332696	1.00[EUR][1000 genomes]
rs73334792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73336577	1.00[EUR][1000 genomes]
rs73336590	1.00[EUR][1000 genomes]
rs73336591	1.00[EUR][1000 genomes]
rs73336597	1.00[EUR][1000 genomes]
rs73338156	1.00[EUR][1000 genomes]
rs73338189	1.00[EUR][1000 genomes]
rs73338199	1.00[EUR][1000 genomes]
rs73340105	1.00[EUR][1000 genomes]
rs73340107	1.00[EUR][1000 genomes]
rs73340171	1.00[EUR][1000 genomes]
rs73340175	1.00[EUR][1000 genomes]
rs73340517	1.00[EUR][1000 genomes]
rs73340530	1.00[EUR][1000 genomes]
rs73342195	1.00[EUR][1000 genomes]
rs73342506	1.00[EUR][1000 genomes]
rs73342522	1.00[EUR][1000 genomes]
rs73342549	1.00[EUR][1000 genomes]
rs73342552	1.00[EUR][1000 genomes]
rs73342554	1.00[EUR][1000 genomes]
rs73344006	1.00[EUR][1000 genomes]
rs73344023	1.00[EUR][1000 genomes]
rs73344031	1.00[EUR][1000 genomes]
rs74064297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8020092	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81192800-81305400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:81251800-81282600	Weak transcription	A549	lung
3	chr14:81259400-81274200	Weak transcription	Thymus	Thymus
4	chr14:81259400-81278400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:81265600-81277200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr14:81265600-81284400	Weak transcription	Fetal Thymus	thymus
7	chr14:81265800-81274600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:81267400-81284200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:81267400-81284800	Weak transcription	HSMM	muscle
10	chr14:81269600-81284400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr14:81272200-81274200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr14:81272200-81284600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr14:81272600-81275600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr14:81273400-81284400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr14:81273600-81275000	Genic enhancers	Dnd41	blood
16	chr14:81273800-81274200	Weak transcription	Fetal Stomach	stomach
17	chr14:81273800-81275200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr14:81274000-81274200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr14:81274000-81274800	Strong transcription	Pancreas	Pancrea
20	chr14:81274000-81275000	ZNF genes & repeats	Aorta	Aorta

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