Variant report

Variant	rs73338156
Chromosome Location	chr14:81291775-81291776
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10133617	1.00[EUR][1000 genomes]
rs10136245	1.00[EUR][1000 genomes]
rs10137925	1.00[EUR][1000 genomes]
rs10140445	1.00[EUR][1000 genomes]
rs10144134	1.00[EUR][1000 genomes]
rs10150034	1.00[EUR][1000 genomes]
rs10151027	1.00[EUR][1000 genomes]
rs10151108	1.00[EUR][1000 genomes]
rs10220319	1.00[EUR][1000 genomes]
rs1375628	1.00[EUR][1000 genomes]
rs17111025	1.00[EUR][1000 genomes]
rs28529404	1.00[EUR][1000 genomes]
rs28650423	1.00[EUR][1000 genomes]
rs327432	1.00[EUR][1000 genomes]
rs327437	1.00[EUR][1000 genomes]
rs56933416	1.00[EUR][1000 genomes]
rs57834417	1.00[EUR][1000 genomes]
rs58040173	1.00[EUR][1000 genomes]
rs58133007	1.00[EUR][1000 genomes]
rs58268321	1.00[EUR][1000 genomes]
rs58594627	1.00[EUR][1000 genomes]
rs58679489	1.00[EUR][1000 genomes]
rs60977678	1.00[EUR][1000 genomes]
rs61435414	1.00[EUR][1000 genomes]
rs73330508	1.00[EUR][1000 genomes]
rs73330543	1.00[EUR][1000 genomes]
rs73332696	1.00[EUR][1000 genomes]
rs73334792	1.00[EUR][1000 genomes]
rs73336577	1.00[EUR][1000 genomes]
rs73336590	1.00[EUR][1000 genomes]
rs73336591	1.00[EUR][1000 genomes]
rs73336597	1.00[EUR][1000 genomes]
rs73338189	1.00[EUR][1000 genomes]
rs73338199	1.00[EUR][1000 genomes]
rs73340105	1.00[EUR][1000 genomes]
rs73340107	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73340171	1.00[EUR][1000 genomes]
rs73340175	1.00[EUR][1000 genomes]
rs73340517	1.00[EUR][1000 genomes]
rs73340530	1.00[EUR][1000 genomes]
rs73342195	1.00[EUR][1000 genomes]
rs73342506	1.00[EUR][1000 genomes]
rs73342522	1.00[EUR][1000 genomes]
rs73342549	1.00[EUR][1000 genomes]
rs73342552	1.00[EUR][1000 genomes]
rs73342554	1.00[EUR][1000 genomes]
rs73344006	1.00[EUR][1000 genomes]
rs73344023	1.00[EUR][1000 genomes]
rs73344031	1.00[EUR][1000 genomes]
rs8020092	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
3	nsv976358	chr14:81287297-81292051	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81192800-81305400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:81281600-81304200	Weak transcription	Primary T cells from cord blood	blood
3	chr14:81284400-81291800	Strong transcription	Fetal Thymus	thymus
4	chr14:81285000-81304600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr14:81285000-81310200	Weak transcription	A549	lung
6	chr14:81285000-81311200	Weak transcription	Ovary	ovary
7	chr14:81285200-81315600	Weak transcription	HSMM	muscle
8	chr14:81286200-81305800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr14:81286400-81292200	Weak transcription	Brain Hippocampus Middle	brain
10	chr14:81288000-81291800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:81288000-81307800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr14:81288200-81294400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr14:81288800-81305800	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr14:81289600-81292000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr14:81290000-81291800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr14:81290000-81291800	ZNF genes & repeats	Thymus	Thymus
17	chr14:81290200-81291800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
18	chr14:81290200-81292200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr14:81290600-81311200	Weak transcription	Fetal Stomach	stomach
20	chr14:81290800-81291800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr14:81291200-81291800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
22	chr14:81291200-81305600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr14:81291400-81291800	ZNF genes & repeats	Dnd41	blood
24	chr14:81291400-81305200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr14:81291400-81306600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr14:81291600-81291800	Strong transcription	Left Ventricle	heart
27	chr14:81291600-81304000	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr14:81291600-81310000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr14:81291600-81310800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr14:81291600-81331000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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