Variant report

Variant	rs73342506
Chromosome Location	chr14:81221260-81221261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81213361..81216342-chr14:81220503..81223223,2	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10133617	1.00[EUR][1000 genomes]
rs10136245	1.00[EUR][1000 genomes]
rs10137925	1.00[EUR][1000 genomes]
rs10140445	1.00[EUR][1000 genomes]
rs10144134	1.00[EUR][1000 genomes]
rs10150034	1.00[EUR][1000 genomes]
rs10151027	1.00[EUR][1000 genomes]
rs10151108	1.00[EUR][1000 genomes]
rs10220319	1.00[EUR][1000 genomes]
rs1375628	1.00[EUR][1000 genomes]
rs17110847	1.00[EUR][1000 genomes]
rs17111025	1.00[EUR][1000 genomes]
rs2197983	1.00[EUR][1000 genomes]
rs28529404	1.00[EUR][1000 genomes]
rs28650423	1.00[EUR][1000 genomes]
rs327432	1.00[EUR][1000 genomes]
rs327437	1.00[EUR][1000 genomes]
rs56933416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57834417	1.00[EUR][1000 genomes]
rs58040173	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58133007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58268321	1.00[EUR][1000 genomes]
rs58594627	1.00[EUR][1000 genomes]
rs58679489	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60977678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61435414	1.00[EUR][1000 genomes]
rs73326672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73328649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73328655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73328682	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73330508	1.00[EUR][1000 genomes]
rs73330519	1.00[AMR][1000 genomes]
rs73330520	1.00[AMR][1000 genomes]
rs73330543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73332696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73334792	1.00[EUR][1000 genomes]
rs73336577	1.00[EUR][1000 genomes]
rs73336590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73336591	1.00[EUR][1000 genomes]
rs73336597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73338156	1.00[EUR][1000 genomes]
rs73338189	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73338199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73340105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73340107	1.00[EUR][1000 genomes]
rs73340171	1.00[EUR][1000 genomes]
rs73340175	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73340517	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73340530	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73342195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73342522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73342549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73342552	1.00[EUR][1000 genomes]
rs73342554	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73344006	1.00[EUR][1000 genomes]
rs73344023	1.00[EUR][1000 genomes]
rs73344031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73344062	1.00[AMR][1000 genomes]
rs73344072	1.00[AMR][1000 genomes]
rs73344073	1.00[AMR][1000 genomes]
rs73344075	1.00[AMR][1000 genomes]
rs73344078	1.00[AMR][1000 genomes]
rs73344096	1.00[AMR][1000 genomes]
rs74064297	1.00[EUR][1000 genomes]
rs8020092	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1035295	chr14:81180999-81236636	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81182800-81224600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr14:81192800-81305400	Weak transcription	Primary B cells from cord blood	blood
3	chr14:81195400-81223000	Weak transcription	Pancreas	Pancrea
4	chr14:81199800-81248600	Weak transcription	Primary T cells from cord blood	blood
5	chr14:81203800-81229000	Weak transcription	Left Ventricle	heart
6	chr14:81205000-81261000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:81205200-81222800	Weak transcription	HMEC	breast
8	chr14:81206400-81226800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr14:81207200-81232600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr14:81207600-81226200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr14:81207600-81230800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr14:81207600-81265400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr14:81208400-81240400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr14:81208800-81232400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:81209400-81227800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr14:81209400-81229000	Weak transcription	Fetal Lung	lung
17	chr14:81209600-81248200	Weak transcription	HSMM	muscle
18	chr14:81210600-81223400	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr14:81210600-81230400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr14:81212800-81227000	Weak transcription	Adipose Nuclei	Adipose
21	chr14:81213400-81231200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr14:81215800-81236200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr14:81219000-81221800	Weak transcription	Psoas Muscle	Psoas
24	chr14:81219200-81228600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:81219800-81221400	Strong transcription	Thymus	Thymus
26	chr14:81219800-81223600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr14:81219800-81224000	Strong transcription	Dnd41	blood
28	chr14:81220000-81223200	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr14:81220200-81224800	Strong transcription	Fetal Thymus	thymus
30	chr14:81220600-81227000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr14:81220600-81229200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr14:81220800-81222600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr14:81221000-81221400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr14:81221000-81221600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr14:81221000-81223000	Flanking Active TSS	NHEK	skin
36	chr14:81221000-81223200	Enhancers	Placenta Amnion	Placenta Amnion
37	chr14:81221000-81238600	Weak transcription	Ovary	ovary
38	chr14:81221200-81223200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr14:81221200-81230800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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