Variant report

Variant	rs73344096
Chromosome Location	chr14:81412907-81412908
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr14:81412541-81412926	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr14:81412407-81412931	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr14:81412544-81412910	MCF10A-Er-Src	breast:	n/a	n/a
4	FOSL1	chr14:81412421-81412993	HCT-116	colon:	n/a	n/a
5	GATA2	chr14:81412628-81412943	HUVEC	blood vessel:	n/a	n/a
6	FOSL2	chr14:81412463-81412961	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
CEP128	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs58040173	1.00[AMR][1000 genomes]
rs58133007	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58679489	1.00[AMR][1000 genomes]
rs60977678	1.00[AMR][1000 genomes]
rs73334006	1.00[AMR][1000 genomes]
rs73338189	1.00[AMR][1000 genomes]
rs73338199	1.00[AMR][1000 genomes]
rs73338226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73338235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73338237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73338251	1.00[AMR][1000 genomes]
rs73340105	1.00[AMR][1000 genomes]
rs73340175	1.00[AMR][1000 genomes]
rs73340517	1.00[AMR][1000 genomes]
rs73340530	1.00[AMR][1000 genomes]
rs73342195	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342506	1.00[AMR][1000 genomes]
rs73342522	1.00[AMR][1000 genomes]
rs73342549	1.00[AMR][1000 genomes]
rs73342554	1.00[AMR][1000 genomes]
rs73344031	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73344062	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73344072	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73344073	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73344075	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73344078	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73346054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73347926	1.00[AMR][1000 genomes]
rs73347935	1.00[AMR][1000 genomes]
rs73347938	1.00[AMR][1000 genomes]
rs73347947	1.00[AMR][1000 genomes]
rs73347973	1.00[AMR][1000 genomes]
rs73349964	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
3	esv2761847	chr14:81392124-81453137	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
4	nsv456346	chr14:81399692-81448382	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
5	nsv565291	chr14:81399692-81448382	Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81408800-81414200	Weak transcription	Liver	Liver
2	chr14:81408800-81421000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:81409000-81414000	Weak transcription	Thymus	Thymus
4	chr14:81409200-81415400	Weak transcription	Placenta	Placenta
5	chr14:81410200-81420000	Weak transcription	Dnd41	blood
6	chr14:81411400-81413600	Enhancers	HMEC	breast
7	chr14:81411800-81413200	Enhancers	NHEK	skin
8	chr14:81411800-81416800	Strong transcription	Fetal Thymus	thymus
9	chr14:81412200-81413000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:81412400-81413000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr14:81412400-81414800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr14:81412600-81413000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:81412600-81415200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:81412600-81421000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links