Variant report

Variant	rs73344006
Chromosome Location	chr14:81358198-81358199
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10150034	1.00[EUR][1000 genomes]
rs10151027	1.00[EUR][1000 genomes]
rs10151108	1.00[EUR][1000 genomes]
rs12100564	0.82[AFR][1000 genomes]
rs1375628	1.00[EUR][1000 genomes]
rs17111025	1.00[EUR][1000 genomes]
rs28529404	1.00[EUR][1000 genomes]
rs28650423	1.00[EUR][1000 genomes]
rs327432	1.00[EUR][1000 genomes]
rs327437	1.00[EUR][1000 genomes]
rs57834417	1.00[EUR][1000 genomes]
rs58040173	1.00[EUR][1000 genomes]
rs58133007	1.00[EUR][1000 genomes]
rs58268321	1.00[EUR][1000 genomes]
rs58594627	1.00[EUR][1000 genomes]
rs58679489	1.00[EUR][1000 genomes]
rs60977678	1.00[EUR][1000 genomes]
rs73334792	1.00[EUR][1000 genomes]
rs73336577	1.00[EUR][1000 genomes]
rs73336590	1.00[EUR][1000 genomes]
rs73336591	1.00[EUR][1000 genomes]
rs73336597	1.00[EUR][1000 genomes]
rs73338156	1.00[EUR][1000 genomes]
rs73338189	1.00[EUR][1000 genomes]
rs73338199	1.00[EUR][1000 genomes]
rs73340105	1.00[EUR][1000 genomes]
rs73340107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73340171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73340175	1.00[EUR][1000 genomes]
rs73340517	1.00[EUR][1000 genomes]
rs73340530	1.00[EUR][1000 genomes]
rs73342195	1.00[EUR][1000 genomes]
rs73342506	1.00[EUR][1000 genomes]
rs73342522	1.00[EUR][1000 genomes]
rs73342549	1.00[EUR][1000 genomes]
rs73342552	1.00[EUR][1000 genomes]
rs73342554	1.00[EUR][1000 genomes]
rs73344010	0.82[AFR][1000 genomes]
rs73344023	1.00[EUR][1000 genomes]
rs73344031	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81321600-81382200	Weak transcription	Left Ventricle	heart
2	chr14:81329200-81359400	Weak transcription	HSMM	muscle
3	chr14:81336600-81358600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:81339600-81359000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:81345200-81386200	Weak transcription	Aorta	Aorta
6	chr14:81346600-81358200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr14:81347200-81358200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr14:81348200-81369200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr14:81349800-81374800	Weak transcription	Brain Hippocampus Middle	brain
10	chr14:81351200-81380600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr14:81351400-81398400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr14:81351800-81372800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr14:81351800-81380000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr14:81351800-81382000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:81352200-81372800	Weak transcription	Thymus	Thymus
16	chr14:81353200-81361200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:81355200-81384600	Weak transcription	Hela-S3	cervix
18	chr14:81355400-81358400	Strong transcription	Dnd41	blood
19	chr14:81356200-81371200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr14:81356400-81361200	Strong transcription	Fetal Thymus	thymus
21	chr14:81356600-81358200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr14:81356800-81381800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr14:81357200-81358800	ZNF genes & repeats	Primary B cells from cord blood	blood
24	chr14:81357200-81359400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr14:81357200-81359600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr14:81357400-81359400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr14:81357800-81358200	Weak transcription	Primary T cells from cord blood	blood
28	chr14:81357800-81358200	Weak transcription	NHDF-Ad	bronchial
29	chr14:81357800-81359400	ZNF genes & repeats	Adipose Nuclei	Adipose
30	chr14:81357800-81392600	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr14:81358000-81359000	Weak transcription	A549	lung
32	chr14:81358000-81380800	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr14:81358000-81396600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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