Variant report

Variant	rs2197983
Chromosome Location	chr14:81070486-81070487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10083541	1.00[CEU][hapmap]
rs10133617	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134651	1.00[CEU][hapmap]
rs10136245	1.00[EUR][1000 genomes]
rs10137577	0.86[ASW][hapmap];1.00[CEU][hapmap]
rs10137925	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10140445	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10140767	1.00[CEU][hapmap]
rs10143746	1.00[AMR][1000 genomes]
rs10143950	1.00[CEU][hapmap]
rs10144134	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10146558	1.00[CEU][hapmap]
rs10147253	1.00[CEU][hapmap]
rs10148198	1.00[CEU][hapmap]
rs10150034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10150186	0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10151108	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10151668	1.00[CEU][hapmap]
rs10220319	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10220635	1.00[CEU][hapmap]
rs11847724	1.00[CEU][hapmap]
rs12323448	1.00[CEU][hapmap]
rs13379189	1.00[CEU][hapmap]
rs1375628	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162173	1.00[CEU][hapmap]
rs162179	1.00[CEU][hapmap]
rs17110847	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17110881	1.00[CEU][hapmap]
rs17111025	1.00[EUR][1000 genomes]
rs17111027	1.00[CEU][hapmap]
rs28451204	1.00[AMR][1000 genomes]
rs28529404	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28605383	1.00[AMR][1000 genomes]
rs28650423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs327432	1.00[EUR][1000 genomes]
rs327436	1.00[CEU][hapmap]
rs327437	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs327468	1.00[CEU][hapmap]
rs56933416	1.00[EUR][1000 genomes]
rs57834417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58268321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58595334	1.00[EUR][1000 genomes]
rs60207137	1.00[EUR][1000 genomes]
rs61435414	1.00[EUR][1000 genomes]
rs716483	1.00[CEU][hapmap]
rs73326644	1.00[EUR][1000 genomes]
rs73326672	1.00[EUR][1000 genomes]
rs73328649	1.00[EUR][1000 genomes]
rs73328655	1.00[EUR][1000 genomes]
rs73328682	1.00[EUR][1000 genomes]
rs73330508	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73330543	1.00[EUR][1000 genomes]
rs73332696	1.00[EUR][1000 genomes]
rs73334792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73336577	1.00[EUR][1000 genomes]
rs73336590	1.00[EUR][1000 genomes]
rs73336591	1.00[EUR][1000 genomes]
rs73336597	1.00[EUR][1000 genomes]
rs73338970	1.00[EUR][1000 genomes]
rs73338973	1.00[EUR][1000 genomes]
rs73340517	1.00[EUR][1000 genomes]
rs73340530	1.00[EUR][1000 genomes]
rs73342506	1.00[EUR][1000 genomes]
rs73342522	1.00[EUR][1000 genomes]
rs73342549	1.00[EUR][1000 genomes]
rs73342552	1.00[EUR][1000 genomes]
rs73342554	1.00[EUR][1000 genomes]
rs74064297	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8020092	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv902116	chr14:81018237-81082400	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81062200-81082200	Weak transcription	Dnd41	blood
2	chr14:81068600-81070600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:81069600-81073800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:81069800-81071800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:81070000-81072000	Weak transcription	Brain Hippocampus Middle	brain
6	chr14:81070000-81072000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:81070200-81071800	Weak transcription	Brain Substantia Nigra	brain
8	chr14:81070200-81072000	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links