Variant report

Variant	rs10147253
Chromosome Location	chr14:81092440-81092441
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10083541	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs10133617	1.00[CEU][hapmap]
rs10134651	1.00[CEU][hapmap]
rs10137577	1.00[CEU][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10137925	1.00[CEU][hapmap]
rs10140445	1.00[CEU][hapmap]
rs10140767	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs10143950	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs10144134	1.00[CEU][hapmap]
rs10146558	1.00[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146613	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10147896	1.00[AMR][1000 genomes]
rs10148198	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149913	1.00[AMR][1000 genomes]
rs10150034	1.00[CEU][hapmap]
rs10151027	1.00[CEU][hapmap]
rs10151108	1.00[CEU][hapmap]
rs10151668	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs10162376	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10162496	1.00[AMR][1000 genomes]
rs10220319	1.00[CEU][hapmap]
rs10220635	1.00[CEU][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847724	1.00[CEU][hapmap]
rs12323448	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13379189	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1375628	1.00[CEU][hapmap]
rs162173	1.00[CEU][hapmap]
rs162179	1.00[CEU][hapmap]
rs17110847	1.00[CEU][hapmap]
rs17110881	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17111027	1.00[CEU][hapmap]
rs2197983	1.00[CEU][hapmap]
rs28376824	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28452095	1.00[AMR][1000 genomes]
rs28464324	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28603151	1.00[AMR][1000 genomes]
rs28753378	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28825072	1.00[AMR][1000 genomes]
rs28887590	1.00[AMR][1000 genomes]
rs327432	1.00[CEU][hapmap]
rs327436	1.00[CEU][hapmap]
rs327437	1.00[CEU][hapmap]
rs327468	1.00[CEU][hapmap]
rs4400984	1.00[AMR][1000 genomes]
rs55854538	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57574075	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58018311	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs716483	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs74064209	1.00[AMR][1000 genomes]
rs74066003	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81083400-81109400	Weak transcription	Dnd41	blood
2	chr14:81087400-81104200	Weak transcription	HSMM	muscle
3	chr14:81088600-81093200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr14:81088600-81094200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr14:81088600-81099400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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