Variant report

Variant	rs10162496
Chromosome Location	chr14:81160248-81160249
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10083541	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10133617	0.84[ASW][hapmap]
rs10134279	1.00[AMR][1000 genomes]
rs10137577	0.84[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs10140767	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10143746	0.95[EUR][1000 genomes]
rs10143950	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.84[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146558	1.00[AMR][1000 genomes]
rs10146613	1.00[AMR][1000 genomes]
rs10147253	1.00[AMR][1000 genomes]
rs10147896	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148198	1.00[AMR][1000 genomes]
rs10149913	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151668	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10162376	1.00[AMR][1000 genomes]
rs10220494	1.00[AMR][1000 genomes]
rs10220567	1.00[AMR][1000 genomes]
rs10220635	1.00[AMR][1000 genomes]
rs12323448	1.00[AMR][1000 genomes]
rs13379189	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs17110881	1.00[AMR][1000 genomes]
rs28376824	1.00[AMR][1000 genomes]
rs28452095	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28464324	1.00[AMR][1000 genomes]
rs28603151	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28605383	0.95[EUR][1000 genomes]
rs28620988	1.00[AMR][1000 genomes]
rs28695726	1.00[AMR][1000 genomes]
rs28753378	1.00[AMR][1000 genomes]
rs28825072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28887590	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4400984	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55854538	1.00[AMR][1000 genomes]
rs57574075	1.00[AMR][1000 genomes]
rs58018311	1.00[AMR][1000 genomes]
rs716483	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064209	1.00[AMR][1000 genomes]
rs74066003	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv974290	chr14:81155152-81161683	Weak transcription Enhancers Genic enhancers	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81147400-81171400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:81148000-81167400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:81148400-81167200	Weak transcription	Fetal Thymus	thymus
4	chr14:81149000-81171200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:81159600-81162400	Weak transcription	Dnd41	blood
6	chr14:81160000-81168400	Weak transcription	Primary T cells from cord blood	blood

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