Variant report

Variant	rs10137577
Chromosome Location	chr14:81105688-81105689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10083541	0.84[ASW][hapmap];1.00[CEU][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs10133617	0.84[ASW][hapmap];1.00[CEU][hapmap]
rs10134279	1.00[AMR][1000 genomes]
rs10134651	1.00[CEU][hapmap]
rs10137925	1.00[CEU][hapmap]
rs10140445	1.00[CEU][hapmap]
rs10140767	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs10143950	0.84[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs10144134	0.86[ASW][hapmap];1.00[CEU][hapmap]
rs10146558	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146613	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10147253	1.00[CEU][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10147896	1.00[AMR][1000 genomes]
rs10148198	1.00[CEU][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149913	1.00[AMR][1000 genomes]
rs10150034	1.00[CEU][hapmap]
rs10151027	1.00[CEU][hapmap]
rs10151108	1.00[CEU][hapmap]
rs10151668	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs10162376	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs10162496	0.84[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs10220319	1.00[CEU][hapmap]
rs10220567	1.00[AMR][1000 genomes]
rs10220635	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847724	1.00[CEU][hapmap]
rs12323448	1.00[CEU][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13379189	0.84[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1375628	0.86[ASW][hapmap];1.00[CEU][hapmap]
rs162173	1.00[CEU][hapmap]
rs162179	1.00[CEU][hapmap]
rs17110847	1.00[CEU][hapmap]
rs17110881	1.00[CEU][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17111027	1.00[CEU][hapmap]
rs2197983	0.86[ASW][hapmap];1.00[CEU][hapmap]
rs28376824	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28452095	1.00[AMR][1000 genomes]
rs28464324	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28603151	1.00[AMR][1000 genomes]
rs28753378	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28825072	1.00[AMR][1000 genomes]
rs28887590	1.00[AMR][1000 genomes]
rs327432	1.00[CEU][hapmap]
rs327436	1.00[CEU][hapmap]
rs327437	1.00[CEU][hapmap]
rs327468	1.00[CEU][hapmap]
rs370473	1.00[CEU][hapmap]
rs4400984	1.00[AMR][1000 genomes]
rs55854538	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57574075	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58018311	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs716483	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs74064209	1.00[AMR][1000 genomes]
rs74066003	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81083400-81109400	Weak transcription	Dnd41	blood
2	chr14:81099000-81106200	Weak transcription	Psoas Muscle	Psoas
3	chr14:81099000-81109600	Weak transcription	Thymus	Thymus
4	chr14:81103200-81106400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr14:81103800-81105800	Enhancers	Osteobl	bone
6	chr14:81103800-81106400	Enhancers	Hela-S3	cervix
7	chr14:81104000-81105800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr14:81104000-81106200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr14:81104200-81105800	Enhancers	NHLF	lung
10	chr14:81104200-81106000	Enhancers	NH-A	brain
11	chr14:81104200-81106200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr14:81104200-81106200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:81104400-81105800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr14:81104600-81106200	Enhancers	NHEK	skin
15	chr14:81104800-81106200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr14:81104800-81106400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:81104800-81106600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:81105200-81105800	Flanking Active TSS	HUVEC	blood vessel
19	chr14:81105400-81112800	Weak transcription	HSMM	muscle
20	chr14:81105600-81105800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr14:81105600-81105800	Flanking Active TSS	A549	lung

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