Variant report
| Variant | rs10162376 |
|---|---|
| Chromosome Location | chr14:81030493-81030494 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:81030392..81031930-chr14:81036761..81039029,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10083541 | 1.00[AMR][1000 genomes] |
| rs10137577 | 0.93[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs10143950 | 1.00[AMR][1000 genomes] |
| rs10146558 | 0.93[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10146613 | 1.00[AMR][1000 genomes] |
| rs10147253 | 1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10148198 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10151668 | 1.00[AMR][1000 genomes] |
| rs10162496 | 1.00[AMR][1000 genomes] |
| rs10220635 | 0.93[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12323448 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13379189 | 0.90[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17110881 | 1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28376824 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28452095 | 1.00[AMR][1000 genomes] |
| rs28464324 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28603151 | 1.00[AMR][1000 genomes] |
| rs28753378 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28825072 | 1.00[AMR][1000 genomes] |
| rs28887590 | 1.00[AMR][1000 genomes] |
| rs55854538 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57574075 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58018311 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs716483 | 1.00[AMR][1000 genomes] |
| rs74064209 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74066003 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869348 | chr14:80921098-81535754 | Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv902116 | chr14:81018237-81082400 | Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:81028400-81033400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr14:81029600-81044800 | Weak transcription | Dnd41 | blood |
