Variant report

Variant	rs10083541
Chromosome Location	chr14:81185225-81185226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10133617	0.84[ASW][hapmap];1.00[CEU][hapmap]
rs10134279	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs10134651	1.00[CEU][hapmap]
rs10137577	0.84[ASW][hapmap];1.00[CEU][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs10137925	1.00[CEU][hapmap]
rs10140445	1.00[CEU][hapmap]
rs10140767	1.00[CEU][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10143950	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144134	1.00[CEU][hapmap]
rs10146558	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs10146613	1.00[AMR][1000 genomes]
rs10147253	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs10147896	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148198	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs10149913	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150034	1.00[CEU][hapmap]
rs10151027	1.00[CEU][hapmap]
rs10151108	1.00[CEU][hapmap]
rs10151668	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10162376	1.00[AMR][1000 genomes]
rs10162496	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10162526	1.00[CEU][hapmap]
rs10220319	1.00[CEU][hapmap]
rs10220494	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs10220567	1.00[AMR][1000 genomes]
rs10220635	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs11847724	1.00[CEU][hapmap]
rs12323448	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs13379189	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs1375628	1.00[CEU][hapmap]
rs162173	1.00[CEU][hapmap]
rs162179	1.00[CEU][hapmap]
rs17110847	1.00[CEU][hapmap]
rs17110881	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17111027	1.00[CEU][hapmap]
rs2197983	1.00[CEU][hapmap]
rs28376824	1.00[AMR][1000 genomes]
rs28452095	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28464324	1.00[AMR][1000 genomes]
rs28519983	1.00[AMR][1000 genomes]
rs28603151	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28620988	1.00[AMR][1000 genomes]
rs28695726	1.00[AMR][1000 genomes]
rs28753378	1.00[AMR][1000 genomes]
rs28825072	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28887590	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs327432	1.00[CEU][hapmap]
rs327436	1.00[CEU][hapmap]
rs327437	1.00[CEU][hapmap]
rs327468	1.00[CEU][hapmap]
rs370473	1.00[CEU][hapmap]
rs4400984	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55854538	1.00[AMR][1000 genomes]
rs57574075	1.00[AMR][1000 genomes]
rs58018311	1.00[AMR][1000 genomes]
rs7155765	1.00[CEU][hapmap]
rs716483	1.00[CEU][hapmap];0.81[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064209	1.00[AMR][1000 genomes]
rs74066003	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1035295	chr14:81180999-81236636	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81179200-81186200	Enhancers	Dnd41	blood
2	chr14:81182000-81206400	Weak transcription	Fetal Thymus	thymus
3	chr14:81182800-81224600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr14:81184200-81185600	Strong transcription	Thymus	Thymus
5	chr14:81185000-81185600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr14:81185000-81185800	Enhancers	NHDF-Ad	bronchial
7	chr14:81185200-81185600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:81185200-81185600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:81185200-81185800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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