Variant report

Variant	rs10147896
Chromosome Location	chr14:81265250-81265251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10083541	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134279	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10137577	1.00[AMR][1000 genomes]
rs10140767	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10143950	1.00[AMR][1000 genomes]
rs10146558	1.00[AMR][1000 genomes]
rs10146613	1.00[AMR][1000 genomes]
rs10147253	1.00[AMR][1000 genomes]
rs10149913	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151668	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10162496	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10220494	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10220567	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10220635	1.00[AMR][1000 genomes]
rs13379189	1.00[AMR][1000 genomes]
rs17110881	1.00[AMR][1000 genomes]
rs17111244	1.00[AMR][1000 genomes]
rs28376824	1.00[AMR][1000 genomes]
rs28452095	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28464324	1.00[AMR][1000 genomes]
rs28519983	1.00[AMR][1000 genomes]
rs28603151	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28620988	1.00[AMR][1000 genomes]
rs28695726	1.00[AMR][1000 genomes]
rs28712586	1.00[AMR][1000 genomes]
rs28753378	1.00[AMR][1000 genomes]
rs28825072	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28887590	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4400984	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55854538	1.00[AMR][1000 genomes]
rs57574075	1.00[AMR][1000 genomes]
rs58018311	1.00[AMR][1000 genomes]
rs716483	1.00[AMR][1000 genomes]
rs74066003	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81192800-81305400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:81207600-81265400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:81235400-81266600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr14:81238000-81267000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr14:81246800-81271600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr14:81249000-81266600	Weak transcription	Primary T cells from cord blood	blood
7	chr14:81250200-81266600	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr14:81250200-81268400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr14:81250400-81266800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr14:81251800-81282600	Weak transcription	A549	lung
11	chr14:81252200-81268200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr14:81256400-81271000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr14:81259400-81265400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr14:81259400-81265400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr14:81259400-81265400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr14:81259400-81265400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:81259400-81265400	Weak transcription	Left Ventricle	heart
18	chr14:81259400-81266600	Weak transcription	HSMM	muscle
19	chr14:81259400-81274000	Weak transcription	Aorta	Aorta
20	chr14:81259400-81274000	Weak transcription	Pancreas	Pancrea
21	chr14:81259400-81274200	Weak transcription	Thymus	Thymus
22	chr14:81259400-81278400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr14:81259600-81266400	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr14:81259600-81266800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr14:81261400-81266400	Weak transcription	Dnd41	blood
26	chr14:81264800-81269400	Weak transcription	Fetal Lung	lung
27	chr14:81265000-81265400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr14:81265200-81265600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr14:81265200-81265600	Strong transcription	Fetal Thymus	thymus

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