Variant report

Variant	rs28376824
Chromosome Location	chr14:81081283-81081284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10083541	1.00[AMR][1000 genomes]
rs10137577	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10140767	1.00[AMR][1000 genomes]
rs10143950	1.00[AMR][1000 genomes]
rs10146558	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146613	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10147253	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10147896	1.00[AMR][1000 genomes]
rs10148198	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149913	1.00[AMR][1000 genomes]
rs10151668	1.00[AMR][1000 genomes]
rs10162376	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10162496	1.00[AMR][1000 genomes]
rs10220635	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12323448	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13379189	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17110881	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28452095	1.00[AMR][1000 genomes]
rs28464324	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28603151	1.00[AMR][1000 genomes]
rs28753378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28825072	1.00[AMR][1000 genomes]
rs28887590	1.00[AMR][1000 genomes]
rs4400984	1.00[AMR][1000 genomes]
rs55854538	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57574075	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58018311	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs716483	1.00[AMR][1000 genomes]
rs74064209	1.00[AMR][1000 genomes]
rs74066003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv902116	chr14:81018237-81082400	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81062200-81082200	Weak transcription	Dnd41	blood
2	chr14:81076200-81086600	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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