Variant report

Variant	rs10149913
Chromosome Location	chr14:81278148-81278149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10083541	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134279	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10137577	1.00[AMR][1000 genomes]
rs10140767	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10143950	1.00[AMR][1000 genomes]
rs10146558	1.00[AMR][1000 genomes]
rs10146613	1.00[AMR][1000 genomes]
rs10147253	1.00[AMR][1000 genomes]
rs10147896	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151668	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10162496	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10220494	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10220567	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10220635	1.00[AMR][1000 genomes]
rs13379189	1.00[AMR][1000 genomes]
rs17110881	1.00[AMR][1000 genomes]
rs17111244	1.00[AMR][1000 genomes]
rs28376824	1.00[AMR][1000 genomes]
rs28452095	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28519983	1.00[AMR][1000 genomes]
rs28603151	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28620988	1.00[AMR][1000 genomes]
rs28695726	1.00[AMR][1000 genomes]
rs28712586	1.00[AMR][1000 genomes]
rs28753378	1.00[AMR][1000 genomes]
rs28825072	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28887590	1.00[AMR][1000 genomes]
rs4400984	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs716483	1.00[AMR][1000 genomes]
rs74066003	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81192800-81305400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:81251800-81282600	Weak transcription	A549	lung
3	chr14:81259400-81278400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:81265600-81284400	Weak transcription	Fetal Thymus	thymus
5	chr14:81267400-81284200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:81267400-81284800	Weak transcription	HSMM	muscle
7	chr14:81269600-81284400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:81272200-81284600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr14:81273400-81284400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr14:81275000-81282600	Weak transcription	Aorta	Aorta
11	chr14:81275200-81282800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr14:81275200-81283400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr14:81275200-81284000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:81275200-81284400	Weak transcription	Thymus	Thymus
15	chr14:81277600-81281000	Weak transcription	Dnd41	blood
16	chr14:81277600-81284600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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