Variant report

Variant	rs17111027
Chromosome Location	chr14:81177276-81177277
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10083541	1.00[CEU][hapmap]
rs10133617	1.00[CEU][hapmap]
rs10134279	1.00[CEU][hapmap]
rs10134651	1.00[CEU][hapmap]
rs10137577	1.00[CEU][hapmap]
rs10137925	1.00[CEU][hapmap]
rs10140445	1.00[CEU][hapmap]
rs10140767	1.00[CEU][hapmap]
rs10143950	1.00[CEU][hapmap]
rs10144134	1.00[CEU][hapmap]
rs10146558	1.00[CEU][hapmap]
rs10147253	1.00[CEU][hapmap]
rs10148198	1.00[CEU][hapmap]
rs10150034	1.00[CEU][hapmap]
rs10151027	1.00[CEU][hapmap]
rs10151108	1.00[CEU][hapmap]
rs10151668	1.00[CEU][hapmap]
rs10220319	1.00[CEU][hapmap]
rs10220494	1.00[CEU][hapmap]
rs10220635	1.00[CEU][hapmap]
rs11847724	1.00[CEU][hapmap]
rs12323448	1.00[CEU][hapmap]
rs13379189	1.00[CEU][hapmap]
rs1375628	1.00[CEU][hapmap]
rs162173	1.00[CEU][hapmap]
rs162179	1.00[CEU][hapmap]
rs17110847	1.00[CEU][hapmap]
rs17110881	1.00[CEU][hapmap]
rs2197983	1.00[CEU][hapmap]
rs327432	1.00[CEU][hapmap]
rs327436	1.00[CEU][hapmap]
rs327437	1.00[CEU][hapmap]
rs327468	1.00[CEU][hapmap]
rs370473	1.00[CEU][hapmap]
rs7155765	1.00[CEU][hapmap]
rs716483	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81163200-81177800	Weak transcription	A549	lung
2	chr14:81166200-81180200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr14:81167600-81181400	Weak transcription	Fetal Thymus	thymus
4	chr14:81168400-81184200	Weak transcription	Thymus	Thymus
5	chr14:81171000-81180600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:81172400-81185200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:81172600-81185200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:81175600-81178600	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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